Magnesium in PDB 8faz: Cryo-Em Structure of the Human BCDX2 Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of the Human BCDX2 Complex (pdb code 8faz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Human BCDX2 Complex, PDB code: 8faz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Human BCDX2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Human BCDX2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:48.2 occ:1.00 O3G D:ANP401 2.0 61.1 1.0 OG1 D:THR114 2.0 69.6 1.0 O2G D:ANP401 2.2 56.7 1.0 O2B D:ANP401 2.5 63.0 1.0 PG D:ANP401 2.5 55.2 1.0 CB D:THR114 3.2 65.1 1.0 N3B D:ANP401 3.5 53.1 1.0 OD2 D:ASP206 3.5 75.2 1.0 PB D:ANP401 3.6 67.7 1.0 OD1 D:ASP206 3.6 76.0 1.0 O1G D:ANP401 3.8 56.7 1.0 CG D:ASP206 4.0 74.3 1.0 O2A D:ANP401 4.0 59.5 1.0 N D:THR114 4.0 67.7 1.0 CA D:THR114 4.2 63.0 1.0 CG2 D:THR114 4.2 65.6 1.0 ND2 D:ASN138 4.3 74.7 1.0 O1B D:ANP401 4.5 59.8 1.0 CA D:GLY140 4.5 75.3 1.0 O3A D:ANP401 4.7 55.8 1.0 PA D:ANP401 4.7 63.3 1.0 O1A D:ANP401 4.8 66.1 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Human BCDX2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Human BCDX2 Complex within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg302 b:53.2 occ:1.00 OG1 X:THR55 2.0 66.2 1.0 O1G X:ANP301 2.0 49.4 1.0 O1B X:ANP301 2.0 60.5 1.0 O3G X:ANP301 2.0 57.1 1.0 PG X:ANP301 2.4 57.6 1.0 CB X:THR55 3.1 70.2 1.0 PB X:ANP301 3.2 58.2 1.0 N3B X:ANP301 3.3 49.0 1.0 O2A X:ANP301 3.5 64.7 1.0 O2G X:ANP301 3.8 63.0 1.0 CG2 X:THR55 4.0 68.7 1.0 O3A X:ANP301 4.1 53.1 1.0 N X:THR55 4.1 68.8 1.0 PA X:ANP301 4.2 63.2 1.0 CA X:THR55 4.2 67.1 1.0 O2B X:ANP301 4.3 61.4 1.0 ND1 X:HIS86 4.3 74.5 1.0 OD2 X:ASP149 4.4 82.1 1.0 O1A X:ANP301 4.4 54.0 1.0 OD1 X:ASP149 4.6 81.2 1.0 CB X:HIS86 4.7 68.0 1.0 CG X:ASP149 4.9 83.2 1.0 CG X:HIS86 5.0 72.2 1.0

Y.Rawal, L.Jia, A.Meir, S.Zhou, H.Kaur, E.A.Ruben, Y.Kwon, K.A.Bernstein, M.Jasin, A.B.Taylor, S.Burma, R.Hromas, A.V.Mazin, W.Zhao, D.Zhou, E.V.Wasmuth, E.C.Greene, P.Sung, S.K.Olsen. Structural Insights Into BCDX2 Complex Function in Homologous Recombination Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06219-W