Magnesium in PDB 8fi7: Structure of Lettuce C20T Bound to Dfho

Protein crystallography data

The structure of Structure of Lettuce C20T Bound to Dfho, PDB code: 8fi7 was solved by L.F.M.Passalacqua, A.R.Ferre-D'amare, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.77 / 2.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.571, 43.104, 117.641, 90, 90, 90
R / Rfree (%) 24.4 / 28.9

Other elements in 8fi7:

The structure of Structure of Lettuce C20T Bound to Dfho also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Potassium (K) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Lettuce C20T Bound to Dfho (pdb code 8fi7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of Lettuce C20T Bound to Dfho, PDB code: 8fi7:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8fi7

Go back to Magnesium Binding Sites List in 8fi7
Magnesium binding site 1 out of 3 in the Structure of Lettuce C20T Bound to Dfho


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Lettuce C20T Bound to Dfho within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg103

b:32.8
occ:1.00
O A:HOH207 2.0 38.1 1.0
N7 A:DG13 2.1 35.8 1.0
OP2 A:DT15 2.1 44.6 1.0
O A:HOH208 2.4 33.0 1.0
O A:HOH203 2.4 38.9 1.0
C5 A:DG13 3.0 32.1 1.0
C8 A:DG13 3.1 34.6 1.0
O6 A:DG13 3.2 36.9 1.0
C6 A:DG13 3.5 37.0 1.0
P A:DT15 3.5 38.8 1.0
OP2 A:DT12 3.6 39.9 1.0
OP2 A:DG13 3.8 39.9 1.0
O5' A:DT15 4.1 34.1 1.0
OP1 A:DT15 4.2 35.0 1.0
C4 A:DG13 4.2 32.3 1.0
N9 A:DG13 4.3 34.0 1.0
O3' A:DA14 4.5 35.0 1.0
C3' A:DA14 4.6 34.8 1.0
P A:DT12 4.7 43.8 1.0
OP1 A:DT12 4.8 38.7 1.0
N1 A:DG13 4.8 34.4 1.0
C7 A:DT12 4.9 40.5 1.0

Magnesium binding site 2 out of 3 in 8fi7

Go back to Magnesium Binding Sites List in 8fi7
Magnesium binding site 2 out of 3 in the Structure of Lettuce C20T Bound to Dfho


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Lettuce C20T Bound to Dfho within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg104

b:44.8
occ:1.00
O A:HOH209 2.0 36.6 1.0
O A:HOH201 2.3 38.1 1.0
OP2 A:DA52 2.6 38.0 1.0
P A:DA52 3.8 38.1 1.0
OP1 A:DA52 4.3 44.4 1.0
O5' A:DA52 4.4 45.6 1.0

Magnesium binding site 3 out of 3 in 8fi7

Go back to Magnesium Binding Sites List in 8fi7
Magnesium binding site 3 out of 3 in the Structure of Lettuce C20T Bound to Dfho


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Lettuce C20T Bound to Dfho within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg105

b:37.7
occ:1.00
OP2 A:DT20 2.0 43.6 1.0
O A:HOH206 2.0 38.9 1.0
O A:HOH202 2.3 38.7 1.0
O A:HOH204 2.6 43.4 1.0
O A:HOH205 2.8 34.8 1.0
P A:DT20 3.4 44.5 1.0
OP1 A:DT20 4.1 48.1 1.0
C2' A:DA7 4.1 40.2 0.5
O6 A:DG22 4.2 32.9 1.0
O3' A:DG19 4.3 34.9 1.0
O5' A:DT20 4.4 36.1 1.0
OP2 A:DA7 4.4 40.9 0.5
OP2 A:DG8 4.5 39.0 1.0
C2' A:DG19 4.5 34.4 1.0
OP2 A:DA7 4.6 40.2 0.5
C2' A:DA7 4.7 39.8 0.5
N7 A:DG8 4.7 37.0 1.0
O5' A:DA7 4.8 40.4 0.5
O5' A:DA7 4.8 40.0 0.5
C3' A:DG19 4.8 39.2 1.0
C3' A:DA7 4.9 39.5 0.5
N7 A:DA21 4.9 35.4 1.0
C8 A:DA7 4.9 36.8 0.5
N6 A:DA21 4.9 32.7 1.0

Reference:

L.F.M.Passalacqua, A.R.Ferre-D'amare. Structure of Lettuce C20T Bound to Dfho To Be Published.
Page generated: Fri Oct 4 02:35:49 2024

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