Magnesium in PDB 8fl8: Yeast Atp Synthase Structure in Presence of Mgatp

The binding sites of Magnesium atom in the Yeast Atp Synthase Structure in Presence of Mgatp (pdb code 8fl8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Yeast Atp Synthase Structure in Presence of Mgatp, PDB code: 8fl8:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Yeast Atp Synthase Structure in Presence of Mgatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast Atp Synthase Structure in Presence of Mgatp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:179.6 occ:1.00 O1G A:ATP601 2.0 180.6 1.0 O3B A:ATP601 2.1 180.6 1.0 O2B A:ATP601 2.4 180.6 1.0 PB A:ATP601 2.4 180.6 1.0 OG1 A:THR178 2.5 167.3 1.0 PG A:ATP601 2.5 180.6 1.0 O3A A:ATP601 2.5 180.6 1.0 CB A:THR178 3.1 167.3 1.0 O3G A:ATP601 3.6 180.6 1.0 PA A:ATP601 3.6 180.6 1.0 O2G A:ATP601 3.6 180.6 1.0 N A:THR178 3.8 167.3 1.0 O2A A:ATP601 3.8 180.6 1.0 O1B A:ATP601 3.9 180.6 1.0 O1A A:ATP601 4.0 180.6 1.0 CA A:THR178 4.1 167.3 1.0 CG2 A:THR178 4.2 167.3 1.0 NZ A:LYS177 4.5 170.4 1.0 CE A:LYS177 4.8 170.4 1.0 NH2 D:ARG356 4.9 183.4 1.0 O5' A:ATP601 4.9 180.6 1.0 O A:ARG173 5.0 181.2 1.0

Magnesium binding site 2 out of 5 in the Yeast Atp Synthase Structure in Presence of Mgatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yeast Atp Synthase Structure in Presence of Mgatp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:162.6 occ:1.00 O1G B:ATP601 2.0 164.2 1.0 O2B B:ATP601 2.0 164.2 1.0 OG1 B:THR178 2.5 163.0 1.0 CG2 B:THR178 2.5 163.0 1.0 PB B:ATP601 2.8 164.2 1.0 PG B:ATP601 2.9 164.2 1.0 O3B B:ATP601 3.0 164.2 1.0 CB B:THR178 3.0 163.0 1.0 O3A B:ATP601 3.1 164.2 1.0 O3G B:ATP601 3.6 164.2 1.0 N B:THR178 3.7 163.0 1.0 PA B:ATP601 3.9 164.2 1.0 CA B:THR178 4.0 163.0 1.0 O1A B:ATP601 4.1 164.2 1.0 O2A B:ATP601 4.1 164.2 1.0 O2G B:ATP601 4.2 164.2 1.0 O1B B:ATP601 4.2 164.2 1.0 OE1 B:GLN174 4.3 166.0 1.0 C B:LYS177 4.9 165.1 1.0 OD1 B:ASP271 5.0 166.2 1.0

Magnesium binding site 3 out of 5 in the Yeast Atp Synthase Structure in Presence of Mgatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Yeast Atp Synthase Structure in Presence of Mgatp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:150.8 occ:1.00 O2B C:ATP601 2.0 167.6 1.0 O3G C:ATP601 2.1 167.6 1.0 O3B C:ATP601 2.2 167.6 1.0 PB C:ATP601 2.5 167.6 1.0 PG C:ATP601 2.8 167.6 1.0 O3A C:ATP601 3.0 167.6 1.0 CG2 C:THR178 3.1 160.8 1.0 CB C:THR178 3.7 160.8 1.0 O2G C:ATP601 3.7 167.6 1.0 O1A C:ATP601 3.8 167.6 1.0 O1G C:ATP601 3.9 167.6 1.0 O1B C:ATP601 3.9 167.6 1.0 PA C:ATP601 4.0 167.6 1.0 N C:THR178 4.1 160.8 1.0 CA C:THR178 4.6 160.8 1.0 O2A C:ATP601 4.8 167.6 1.0 OG1 C:THR178 4.8 160.8 1.0

Magnesium binding site 4 out of 5 in the Yeast Atp Synthase Structure in Presence of Mgatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Yeast Atp Synthase Structure in Presence of Mgatp within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:158.4 occ:1.00 O2B E:ATP501 2.0 170.2 1.0 O2G E:ATP501 2.0 170.2 1.0 CG2 E:THR164 2.5 157.9 1.0 O3B E:ATP501 2.6 170.2 1.0 PB E:ATP501 2.9 170.2 1.0 PG E:ATP501 2.9 170.2 1.0 OG1 E:THR164 3.0 157.9 1.0 CB E:THR164 3.3 157.9 1.0 NH2 E:ARG190 3.5 163.4 1.0 OE2 E:GLU193 3.6 177.5 1.0 O3G E:ATP501 3.7 170.2 1.0 O3A E:ATP501 3.7 170.2 1.0 O1A E:ATP501 4.0 170.2 1.0 O1B E:ATP501 4.1 170.2 1.0 O1G E:ATP501 4.1 170.2 1.0 N E:THR164 4.1 157.9 1.0 PA E:ATP501 4.2 170.2 1.0 OE1 E:GLU193 4.2 177.5 1.0 CG E:LYS163 4.3 151.9 1.0 CD E:GLU193 4.3 177.5 1.0 O2A E:ATP501 4.3 170.2 1.0 CA E:THR164 4.3 157.9 1.0 NZ E:LYS163 4.5 151.9 1.0 CE E:LYS163 4.6 151.9 1.0 CZ E:ARG190 4.8 163.4 1.0

Magnesium binding site 5 out of 5 in the Yeast Atp Synthase Structure in Presence of Mgatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Yeast Atp Synthase Structure in Presence of Mgatp within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:137.1 occ:1.00 O2B F:ADP501 2.0 169.6 1.0 CG2 F:THR164 2.4 159.1 1.0 PB F:ADP501 3.4 169.6 1.0 NH1 F:ARG190 3.5 176.7 1.0 O2A F:ADP501 3.5 169.6 1.0 CB F:THR164 3.6 159.1 1.0 OG1 F:THR164 3.7 159.1 1.0 O3A F:ADP501 3.9 169.6 1.0 OE1 F:GLU193 3.9 192.3 1.0 PA F:ADP501 4.0 169.6 1.0 O3B F:ADP501 4.0 169.6 1.0 O1A F:ADP501 4.1 169.6 1.0 OE2 F:GLU193 4.1 192.3 1.0 CD F:GLU193 4.4 192.3 1.0 N F:THR164 4.4 159.1 1.0 O1B F:ADP501 4.5 169.6 1.0 CA F:THR164 4.6 159.1 1.0 OE2 F:GLU189 4.7 197.1 1.0 OD1 F:ASN257 4.7 175.2 1.0 NH1 B:ARG375 4.8 170.3 1.0 CZ F:ARG190 4.8 176.7 1.0

S.Sharma, H.Patel, M.Luo, D.M.Mueller, M.Liao. Yeast Atp Synthase Structure in Presence of Mgatp To Be Published.