Magnesium in PDB 8ftd: Structure of Escherichia Coli Ceda in Complex with Transcription Initiation Complex

All present enzymatic activity of Structure of Escherichia Coli Ceda in Complex with Transcription Initiation Complex:
2.7.7.6;

The structure of Structure of Escherichia Coli Ceda in Complex with Transcription Initiation Complex also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Structure of Escherichia Coli Ceda in Complex with Transcription Initiation Complex (pdb code 8ftd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Escherichia Coli Ceda in Complex with Transcription Initiation Complex, PDB code: 8ftd:

Magnesium binding site 1 out of 1 in the Structure of Escherichia Coli Ceda in Complex with Transcription Initiation Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Escherichia Coli Ceda in Complex with Transcription Initiation Complex within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg1501 b:96.3 occ:1.00 OD1 J:ASP462 2.1 99.2 1.0 OD2 J:ASP464 2.9 100.7 1.0 CG J:ASP462 2.9 99.2 1.0 OD1 J:ASP464 3.0 100.7 1.0 OD2 J:ASP462 3.1 99.2 1.0 CB J:ASP460 3.2 101.9 1.0 CG J:ASP464 3.3 100.7 1.0 OD2 J:ASP460 3.6 101.9 1.0 CG J:ASP460 3.9 101.9 1.0 CA J:ASP460 4.3 101.9 1.0 N J:ASP460 4.4 101.9 1.0 CB J:ASP462 4.4 99.2 1.0 N J:ASP462 4.6 99.2 1.0 C J:ASP460 4.7 101.9 1.0 CB J:ASP464 4.8 100.7 1.0 O J:ASP462 4.9 99.2 1.0 CA J:ASP462 4.9 99.2 1.0 NH2 J:ARG425 4.9 101.5 1.0 C J:ASP462 4.9 99.2 1.0 N J:PHE461 4.9 95.2 1.0

N.Vasilyev, M.M.J.Liu, E.Vitaly, I.Shamovsky, E.Nudler. General Transcription Factor From Escherichia Coli with A Distinct Mechanism of Action Nat.Struct.Mol.Biol. 2024.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-01154-W