Magnesium in PDB 8gh6: Bombyx Mori R2 Retrotransposon Initiating Target-Primed Reverse Transcription

The structure of Bombyx Mori R2 Retrotransposon Initiating Target-Primed Reverse Transcription also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Bombyx Mori R2 Retrotransposon Initiating Target-Primed Reverse Transcription (pdb code 8gh6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Bombyx Mori R2 Retrotransposon Initiating Target-Primed Reverse Transcription, PDB code: 8gh6:

Magnesium binding site 1 out of 1 in the Bombyx Mori R2 Retrotransposon Initiating Target-Primed Reverse Transcription


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bombyx Mori R2 Retrotransposon Initiating Target-Primed Reverse Transcription within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1203 b:9.0 occ:1.00 O A:PHE530 2.1 32.4 1.0 OD2 A:ASP628 2.2 30.9 1.0 O1A A:TTP1204 2.2 34.3 1.0 O3G A:TTP1204 2.5 33.0 1.0 O1B A:TTP1204 2.6 33.1 1.0 OD2 A:ASP529 2.7 31.6 1.0 CG A:ASP628 3.2 32.2 1.0 C A:PHE530 3.3 29.0 1.0 CG A:ASP529 3.5 33.6 1.0 PA A:TTP1204 3.6 39.1 1.0 OD1 A:ASP628 3.6 38.4 1.0 PB A:TTP1204 3.7 43.0 1.0 N A:PHE530 3.7 21.5 1.0 PG A:TTP1204 3.8 40.5 1.0 CA A:PHE530 4.0 22.5 1.0 OD1 A:ASP529 4.0 30.5 1.0 O3A A:TTP1204 4.0 35.0 1.0 O3B A:TTP1204 4.1 36.6 1.0 N A:ALA531 4.3 23.3 1.0 CB A:ASP529 4.4 30.8 1.0 C5' A:TTP1204 4.4 33.5 1.0 O1G A:TTP1204 4.5 31.0 1.0 CB A:ALA533 4.5 21.3 1.0 CA A:ALA531 4.5 18.5 1.0 O5' A:TTP1204 4.5 31.1 1.0 CB A:ASP628 4.5 21.9 1.0 O2A A:TTP1204 4.5 35.1 1.0 CB A:PHE530 4.6 19.3 1.0 C A:ASP529 4.6 30.8 1.0 N A:LYS532 4.7 35.5 1.0 N A:ALA533 4.8 28.4 1.0 CA A:ASP529 4.9 27.1 1.0 O2G A:TTP1204 4.9 42.2 1.0 C A:ALA531 4.9 30.9 1.0 O2B A:TTP1204 5.0 38.5 1.0

M.E.Wilkinson, C.J.Frangieh, R.Macrae, F.Zhang. Structure of the R2 Non-Ltr Retrotransposon Initiating Target-Primed Reverse Transcription To Be Published.