Magnesium in PDB 8ghu: Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 83;

Binding sites:

The binding sites of Magnesium atom in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit (pdb code 8ghu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 83 binding sites of Magnesium where determined in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit, PDB code: 8ghu:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 83 in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1601 b:151.2 occ:1.00 OP1 a:A687 3.6 269.3 1.0 C3' a:U686 3.6 261.0 1.0 OP2 a:A687 3.8 269.3 1.0 P a:A687 4.0 269.3 1.0 C2' a:U686 4.1 261.0 1.0 O3' a:U686 4.2 261.0 1.0 O2' a:U686 4.3 261.0 1.0 C5' a:U686 4.6 261.0 1.0 C4' a:U686 4.7 261.0 1.0

Magnesium binding site 2 out of 83 in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1602 b:67.5 occ:1.00 OP1 a:G266 2.8 78.7 1.0 N2 a:G266 3.4 78.7 1.0 P a:G266 3.8 78.7 1.0 OP2 a:U256 3.9 83.4 1.0 C5 a:U256 3.9 83.4 1.0 OP2 a:G266 3.9 78.7 1.0 C2 a:G266 4.3 78.7 1.0 O4 a:U256 4.4 83.4 1.0 O6 a:G257 4.5 82.4 1.0 C4 a:U256 4.5 83.4 1.0 C6 a:U256 4.8 83.4 1.0 O3' a:G265 4.8 73.4 1.0 N1 a:G266 4.8 78.7 1.0 N7 a:G257 4.8 82.4 1.0

Magnesium binding site 3 out of 83 in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1603 b:78.3 occ:1.00 OP2 a:G731 3.3 104.9 1.0 P a:G731 4.0 104.9 1.0 OP1 a:G731 4.0 104.9 1.0 OP2 a:A816 4.1 85.1 1.0 C5' a:G730 4.2 96.0 1.0 OP1 a:G730 4.2 96.0 1.0 O3' a:G730 4.4 96.0 1.0 OP1 a:A816 4.4 85.1 1.0 O3' a:G1526 4.5 89.0 1.0 C4' a:A816 4.7 85.1 1.0 P a:A816 4.7 85.1 1.0 N1 a:A814 4.7 87.0 1.0 O2' a:A816 4.7 85.1 1.0 O5' a:G730 4.8 96.0 1.0 O4' a:A816 4.8 85.1 1.0 C4' a:G730 4.9 96.0 1.0

Magnesium binding site 4 out of 83 in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1604 b:77.9 occ:1.00 O2 a:C576 4.3 74.4 1.0 OP1 a:U905 4.5 73.1 1.0 O3' a:U904 4.6 72.3 1.0 O3' a:C576 4.6 74.4 1.0 OP1 a:G577 4.7 85.8 1.0 C1' a:C576 4.8 74.4 1.0

Magnesium binding site 5 out of 83 in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1605 b:60.7 occ:1.00 OP2 a:C758 2.5 72.4 1.0 OP2 a:C580 2.7 91.0 1.0 O5' a:U757 3.1 68.0 1.0 OP2 a:U757 3.5 68.0 1.0 P a:U757 3.6 68.0 1.0 OP1 a:U757 3.6 68.0 1.0 P a:C758 3.7 72.4 1.0 P a:C580 3.8 91.0 1.0 C3' a:U757 3.9 68.0 1.0 C5' a:U757 3.9 68.0 1.0 O3' a:U757 4.0 68.0 1.0 OP1 a:C580 4.1 91.0 1.0 O5' a:C580 4.3 91.0 1.0 OP1 a:C758 4.4 72.4 1.0 N7 a:G581 4.5 82.1 1.0 C4' a:U757 4.5 68.0 1.0 C6 a:U757 4.9 68.0 1.0 OP2 a:G581 4.9 82.1 1.0

Magnesium binding site 6 out of 83 in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1606 b:49.1 occ:1.00 O6 a:G645 3.4 73.7 1.0 O6 a:G646 3.8 79.4 1.0 O6 a:G592 4.1 94.5 1.0 N7 a:G645 4.1 73.7 1.0 C6 a:G645 4.2 73.7 1.0 C5 a:G645 4.5 73.7 1.0 O4 a:U593 4.6 85.1 1.0 C5 a:U644 4.8 72.2 1.0 C6 a:G646 4.9 79.4 1.0 O4 a:U644 5.0 72.2 1.0

Magnesium binding site 7 out of 83 in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1607 b:43.3 occ:1.00 OP1 a:G388 4.0 55.6 1.0 OP1 a:U387 4.1 58.8 1.0 O2' a:C58 4.2 65.0 1.0 N7 a:G388 4.6 55.6 1.0 OP2 a:U387 4.9 58.8 1.0 P a:U387 4.9 58.8 1.0

Magnesium binding site 8 out of 83 in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1608 b:75.8 occ:1.00 O4 a:U12 3.6 71.0 1.0 O6 a:G11 3.6 68.0 1.0 O6 a:G21 3.7 66.0 1.0 MG a:MG1679 4.4 66.9 1.0 O6 a:G22 4.5 65.9 1.0 C6 a:G21 4.6 66.0 1.0 C4 a:U12 4.6 71.0 1.0 C6 a:G11 4.7 68.0 1.0 N3 a:U12 5.0 71.0 1.0 OG1 e:THR130 5.0 69.1 1.0

Magnesium binding site 9 out of 83 in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1609 b:56.0 occ:1.00 N7 a:G667 4.1 115.5 1.0 O2' a:A665 4.3 114.7 1.0 O3' a:A665 4.3 114.7 1.0 O6 a:G667 4.7 115.5 1.0 N7 a:G666 4.8 112.3 1.0 OP2 a:G667 4.8 115.5 1.0 C4' a:A665 4.8 114.7 1.0

Magnesium binding site 10 out of 83 in the Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Methyltransferase Rmtc Bound to the 30S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg1610 b:95.7 occ:1.00 OP1 a:U114 3.1 72.1 1.0 OP1 a:C48 3.2 63.1 1.0 OP1 a:C307 3.7 54.0 1.0 OP2 a:C48 3.8 63.1 1.0 P a:C48 3.9 63.1 1.0 P a:U114 4.0 72.1 1.0 OP2 a:U114 4.1 72.1 1.0 O3' a:A306 4.3 52.3 1.0 O6 a:G31 4.4 58.5 1.0 N1 a:G31 4.4 58.5 1.0 OP2 a:G115 4.6 70.9 1.0 O5' a:U114 4.7 72.1 1.0 O5' a:C48 4.7 63.1 1.0 P a:C307 4.7 54.0 1.0 C6 a:G31 4.7 58.5 1.0

P.Srinivas, M.Nosrati, N.Zelinskaya, D.Dey, L.R.Comstock, C.M.Dunham, G.L.Conn. 30S Subunit Recognition and G1405 Modification By the Aminoglycoside-Resistance 16S Ribosomal Rna Methyltransferase Rmtc. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 36993224
DOI: 10.1101/2023.03.13.532395