Magnesium in PDB 8gip: Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.040MM MN2+

All present enzymatic activity of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.040MM MN2+:
2.7.7.86;

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.040MM MN2+, PDB code: 8gip was solved by S.Wu, J.Sohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.79 / 2.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	77.933, 98.397, 142.47, 90, 90, 90
R / Rfree (%)	18.6 / 24.2

The structure of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.040MM MN2+ also contains other interesting chemical elements:

Manganese	(Mn)	2 atoms
Zinc	(Zn)	2 atoms

The binding sites of Magnesium atom in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.040MM MN2+ (pdb code 8gip). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.040MM MN2+, PDB code: 8gip:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.040MM MN2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.040MM MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:39.2 occ:1.00 O A:HOH708 1.9 37.9 1.0 O2A A:ATP601 2.1 39.7 1.0 O3G A:ATP601 2.1 42.8 1.0 OE1 A:GLU211 2.2 40.5 1.0 OD2 A:ASP213 2.2 41.8 1.0 O2B A:ATP601 2.3 36.8 1.0 CD A:GLU211 3.2 42.1 1.0 PB A:ATP601 3.2 37.9 1.0 CG A:ASP213 3.3 42.2 1.0 PG A:ATP601 3.3 39.1 1.0 O3B A:ATP601 3.3 38.3 1.0 PA A:ATP601 3.3 32.5 1.0 O3A A:ATP601 3.4 37.2 1.0 OD1 A:ASP213 3.6 46.2 1.0 OE2 A:GLU211 3.6 44.9 1.0 MN A:MN604 3.8 66.0 1.0 OG A:SER199 3.8 41.6 1.0 O2G A:ATP601 4.0 35.1 1.0 O A:HOH707 4.0 35.1 1.0 N A:SER199 4.2 36.8 1.0 O A:GLU211 4.3 39.5 1.0 C5' A:ATP601 4.3 37.9 1.0 O5' A:ATP601 4.3 36.4 1.0 O1G A:ATP601 4.4 35.4 1.0 O1A A:ATP601 4.4 42.0 1.0 CG A:GLU211 4.5 40.1 1.0 CB A:ASP213 4.6 39.1 1.0 O1B A:ATP601 4.6 41.3 1.0 CB A:GLU211 4.6 40.1 1.0 CB A:SER199 4.7 38.3 1.0 C A:GLU211 4.7 39.2 1.0 CA A:GLY198 4.8 38.6 1.0

Magnesium binding site 2 out of 2 in the Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.040MM MN2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Ternary Complex of Mouse Cgas with Dsdna and Bound Atp: with 10MM MG2+ and 0.040MM MN2+ within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:42.2 occ:1.00 OE1 C:GLU211 2.1 47.4 1.0 O2B C:ATP601 2.4 42.8 1.0 OD2 C:ASP213 2.4 47.2 1.0 O3G C:ATP601 2.5 41.3 1.0 O2A C:ATP601 2.9 43.5 1.0 OG C:SER199 3.2 41.4 1.0 CD C:GLU211 3.3 50.1 1.0 O C:HOH713 3.4 39.2 1.0 CG C:ASP213 3.6 45.8 1.0 PG C:ATP601 3.6 40.1 1.0 PB C:ATP601 3.6 38.7 1.0 O C:GLU211 3.6 45.7 1.0 O3B C:ATP601 3.6 38.0 1.0 N C:SER199 3.7 38.4 1.0 O2G C:ATP601 3.9 39.0 1.0 OE2 C:GLU211 4.1 49.9 1.0 CB C:SER199 4.1 37.7 1.0 C C:GLU211 4.1 45.6 1.0 O3A C:ATP601 4.2 44.5 1.0 OD1 C:ASP213 4.2 47.5 1.0 CB C:GLU211 4.2 40.9 1.0 PA C:ATP601 4.2 41.1 1.0 CG C:GLU211 4.4 41.5 1.0 CA C:SER199 4.5 37.1 1.0 N C:TYR200 4.6 38.4 1.0 CA C:GLY198 4.6 40.3 1.0 C C:GLY198 4.6 40.0 1.0 N C:PHE212 4.6 43.0 1.0 CD C:LYS205 4.6 41.3 1.0 CB C:ASP213 4.7 45.3 1.0 MN C:MN604 4.8 72.5 1.0 CA C:PHE212 4.8 42.0 1.0 CA C:GLU211 4.8 46.8 1.0 N C:ASP213 4.8 44.0 1.0 O1B C:ATP601 4.9 44.5 1.0 C C:PHE212 4.9 43.7 1.0 C5' C:ATP601 4.9 41.8 1.0 O1G C:ATP601 4.9 40.4 1.0

S.Wu, S.B.Gabelli, J.Sohn. The Structural Basis For 2'-5'/3'-5'-Cgamp Synthesis By Cgas Nat Commun V. 15 4012 2024.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-024-48365-3