Magnesium in PDB 8gwk: Sars-Cov-2 Rna E-Rtc Complex with Rmp-NSP9 and Gmppnp

All present enzymatic activity of Sars-Cov-2 Rna E-Rtc Complex with Rmp-NSP9 and Gmppnp:
2.7.7.48;

The structure of Sars-Cov-2 Rna E-Rtc Complex with Rmp-NSP9 and Gmppnp also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

The binding sites of Magnesium atom in the Sars-Cov-2 Rna E-Rtc Complex with Rmp-NSP9 and Gmppnp (pdb code 8gwk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Sars-Cov-2 Rna E-Rtc Complex with Rmp-NSP9 and Gmppnp, PDB code: 8gwk:

Magnesium binding site 1 out of 1 in the Sars-Cov-2 Rna E-Rtc Complex with Rmp-NSP9 and Gmppnp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sars-Cov-2 Rna E-Rtc Complex with Rmp-NSP9 and Gmppnp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1004 b:127.1 occ:1.00 O1G A:GNP1003 2.7 114.8 1.0 O A:HOH1102 2.8 107.1 1.0 O A:HOH1103 3.2 101.5 1.0 O6 G:F86201 3.7 119.4 1.0 O3A A:GNP1003 3.8 115.6 1.0 NZ A:LYS73 3.9 91.2 1.0 CE A:LYS73 4.0 94.3 1.0 O A:HOH1104 4.0 107.3 1.0 O1A A:GNP1003 4.1 112.9 1.0 PG A:GNP1003 4.1 124.9 1.0 O3G A:GNP1003 4.5 109.6 1.0 OD2 A:ASP218 4.6 85.9 1.0 PA A:GNP1003 4.7 125.9 1.0 O1B A:GNP1003 4.7 109.1 1.0 PB A:GNP1003 4.7 114.1 1.0 OD1 A:ASP218 4.7 88.5 1.0 O4 G:F86201 4.8 121.1 1.0 P1 G:F86201 4.8 130.7 1.0 O G:HOH301 4.9 118.9 1.0 N3B A:GNP1003 5.0 110.9 1.0 ND2 A:ASN52 5.0 142.4 1.0

L.Yan, Y.Huang, J.Ge, Z.Liu, P.Lu, B.Huang, S.Gao, J.Wang, L.Tan, S.Ye, F.Yu, W.Lan, S.Xu, F.Zhou, L.Shi, L.W.Guddat, Y.Gao, Z.Rao, Z.Lou. A Mechanism For Sars-Cov-2 Rna Capping and Its Inhibition By Nucleotide Analog Inhibitors. Cell V. 185 4347 2022.
ISSN: ISSN 1097-4172
PubMed: 36335936
DOI: 10.1016/J.CELL.2022.09.037