Magnesium in PDB 8gzg: Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Rpitc

All present enzymatic activity of Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Rpitc:
2.7.7.6;

The structure of Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Rpitc also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Rpitc (pdb code 8gzg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Rpitc, PDB code: 8gzg:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Rpitc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Rpitc within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2001 b:12.7 occ:1.00 O3' 3:A15 2.2 28.5 1.0 OD1 D:ASP471 2.2 28.5 1.0 CG D:ASP471 3.0 28.5 1.0 OD1 D:ASP469 3.1 28.5 1.0 OD2 D:ASP471 3.2 28.5 1.0 CB D:ASP467 3.3 28.5 1.0 O D:ASP467 3.4 28.5 1.0 C3' 3:A15 3.4 28.5 1.0 O2' 3:A15 3.6 28.5 1.0 N D:ASP467 3.7 28.5 1.0 OD2 D:ASP469 3.7 28.5 1.0 CG D:ASP469 3.7 28.5 1.0 CA D:ASP467 3.8 28.5 1.0 C D:ASP467 3.9 28.5 1.0 C4' 3:A15 4.0 28.5 1.0 C2' 3:A15 4.1 28.5 1.0 CB D:ASP471 4.3 28.5 1.0 NH2 D:ARG432 4.4 28.5 1.0 CG D:ASP467 4.5 28.5 1.0 C5' 3:A15 4.6 28.5 1.0 N D:ASP471 4.7 28.5 1.0 N D:ASP469 4.8 28.5 1.0 C D:ALA466 4.9 28.5 1.0 CA D:ASP471 4.9 28.5 1.0 OD2 D:ASP467 5.0 28.5 1.0 N D:PHE468 5.0 28.5 1.0

L.Q.Shen, L.L.You, Y.Zhang. Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc Proc.Natl.Acad.Sci.Usa 2023.
ISSN: ESSN 1091-6490