Magnesium in PDB 8gzh: Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc

All present enzymatic activity of Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc:
2.7.7.6;

The structure of Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc (pdb code 8gzh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc, PDB code: 8gzh:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2001 b:12.6 occ:1.00 O2A 2:CTP3001 2.1 18.7 1.0 OD1 D:ASP469 2.2 18.7 1.0 OD1 D:ASP467 2.2 18.7 1.0 CG D:ASP467 2.9 18.7 1.0 CG D:ASP469 3.0 18.7 1.0 OD2 D:ASP467 3.1 18.7 1.0 OD1 D:ASP471 3.2 20.7 1.0 OD2 D:ASP469 3.2 18.7 1.0 MG D:MG2003 3.3 13.7 1.0 PA 2:CTP3001 3.3 18.7 1.0 OD2 D:ASP471 3.5 20.7 1.0 CG D:ASP471 3.6 20.7 1.0 O5' 2:CTP3001 3.8 18.7 1.0 C3' 3:A15 4.1 18.7 1.0 O1A 2:CTP3001 4.1 18.7 1.0 O1B 2:CTP3001 4.2 18.7 1.0 CB D:ASP467 4.2 18.7 1.0 O D:ASP467 4.2 18.7 1.0 CB D:ASP469 4.4 18.7 1.0 N D:ASP467 4.5 18.7 1.0 C D:ASP467 4.5 18.7 1.0 N D:ASP469 4.6 18.7 1.0 O3A 2:CTP3001 4.6 18.7 1.0 CA D:ASP467 4.6 18.7 1.0 C4' 3:A15 4.7 18.7 1.0 NZ C:LYS829 4.7 18.7 1.0 C D:ASP469 4.8 18.7 1.0 C5' 2:CTP3001 4.8 18.7 1.0 CA D:ASP469 4.8 18.7 1.0 O2' 3:A15 4.9 18.7 1.0 N D:ASP471 4.9 20.7 1.0 N D:GLY470 5.0 18.7 1.0 CB D:ASP471 5.0 20.7 1.0 C5' 3:A15 5.0 18.7 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg2003 b:13.7 occ:1.00 O1B 2:CTP3001 1.8 18.7 1.0 O2A 2:CTP3001 2.2 18.7 1.0 OD2 D:ASP467 2.3 18.7 1.0 OD2 D:ASP469 2.4 18.7 1.0 O2G 2:CTP3001 2.7 18.7 1.0 PB 2:CTP3001 2.9 18.7 1.0 O1G 2:CTP3001 3.0 18.7 1.0 O3A 2:CTP3001 3.1 18.7 1.0 PG 2:CTP3001 3.2 18.7 1.0 PA 2:CTP3001 3.2 18.7 1.0 MG D:MG2001 3.3 12.6 1.0 CG D:ASP467 3.3 18.7 1.0 O3B 2:CTP3001 3.4 18.7 1.0 CG D:ASP469 3.4 18.7 1.0 OD1 D:ASP469 3.8 18.7 1.0 OD1 C:ASP670 3.8 18.7 1.0 OD1 D:ASP467 3.8 18.7 1.0 O5' 2:CTP3001 4.2 18.7 1.0 O2B 2:CTP3001 4.3 18.7 1.0 O1A 2:CTP3001 4.4 18.7 1.0 CB D:ASP467 4.6 18.7 1.0 NZ C:LYS829 4.6 18.7 1.0 O3G 2:CTP3001 4.7 18.7 1.0 CE C:LYS829 4.7 18.7 1.0 CB D:ASP469 4.8 18.7 1.0 NH1 C:ARG862 4.9 8.3 1.0

L.L.You, L.Q.Shen, Y.Zhang. Cryo-Em Structure of Synechocystis Sp. Pcc 6803 Ctp-Bound Rpitc Proc.Natl.Acad.Sci.Usa 2023.
ISSN: ESSN 1091-6490