Magnesium in PDB 8gzp: Cryo-Em Structure of the NS5-Sla Complex

The structure of Cryo-Em Structure of the NS5-Sla Complex also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of the NS5-Sla Complex (pdb code 8gzp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the NS5-Sla Complex, PDB code: 8gzp:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the NS5-Sla Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the NS5-Sla Complex within 5.0Å range: probe atom residue distance (Å) B Occ S:Mg202 b:122.6 occ:1.00 O2A S:GDP201 2.0 121.8 1.0 OP1 S:A1 2.0 122.8 1.0 O1B S:GDP201 2.1 121.8 1.0 P S:A1 2.9 122.8 1.0 PB S:GDP201 3.0 121.8 1.0 O2B S:GDP201 3.1 121.8 1.0 PA S:GDP201 3.2 121.8 1.0 O5' S:A1 3.4 122.8 1.0 O3A S:GDP201 3.6 121.8 1.0 O1A S:GDP201 3.9 121.8 1.0 N7 S:G2 3.9 126.6 1.0 O4 S:U3 3.9 135.4 1.0 C8 S:A1 4.2 122.8 1.0 N7 S:A1 4.3 122.8 1.0 O3B S:GDP201 4.3 121.8 1.0 OP2 S:A1 4.3 122.8 1.0 O6 S:G2 4.4 126.6 1.0 OG A:SER150 4.4 110.2 1.0 O5' S:GDP201 4.5 121.8 1.0 C4 S:U3 4.7 135.4 1.0 OP2 S:G2 4.7 126.6 1.0 C5' S:A1 4.8 122.8 1.0 C5' S:GDP201 4.8 121.8 1.0 C5 S:G2 4.8 126.6 1.0 C8 S:G2 4.9 126.6 1.0

T.Osawa, M.Aoki, H.Ehara, S.I.Sekine. Structures of Dengue Virus Rna Replicase Complexes. Mol.Cell 2023.
ISSN: ISSN 1097-2765
PubMed: 37478848
DOI: 10.1016/J.MOLCEL.2023.06.023