Magnesium in PDB 8h68: Crystal Structure of Caenorhabditis Elegans Nmad-1 in Complex with Nog and Mg(II)

All present enzymatic activity of Crystal Structure of Caenorhabditis Elegans Nmad-1 in Complex with Nog and Mg(II):
1.14.11.51;

The structure of Crystal Structure of Caenorhabditis Elegans Nmad-1 in Complex with Nog and Mg(II), PDB code: 8h68 was solved by Y.Shi, J.Ding, H.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.84 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.026, 91.867, 133.302, 90, 90, 90
R / Rfree (%)	18.2 / 24.2

The binding sites of Magnesium atom in the Crystal Structure of Caenorhabditis Elegans Nmad-1 in Complex with Nog and Mg(II) (pdb code 8h68). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Caenorhabditis Elegans Nmad-1 in Complex with Nog and Mg(II), PDB code: 8h68:

Magnesium binding site 1 out of 1 in the Crystal Structure of Caenorhabditis Elegans Nmad-1 in Complex with Nog and Mg(II)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Caenorhabditis Elegans Nmad-1 in Complex with Nog and Mg(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg304 b:23.5 occ:1.00 NE2 A:HIS239 1.9 27.0 1.0 O2' A:OGA303 1.9 28.0 1.0 OD1 A:ASP186 1.9 29.1 1.0 O1 A:OGA303 2.0 30.2 1.0 NE2 A:HIS184 2.2 30.8 1.0 O A:HOH455 2.2 23.5 1.0 C2 A:OGA303 2.5 30.7 1.0 C1 A:OGA303 2.6 30.0 1.0 CE1 A:HIS239 2.8 29.6 1.0 CD2 A:HIS239 2.9 28.7 1.0 CE1 A:HIS184 3.0 30.6 1.0 CG A:ASP186 3.0 34.7 1.0 CD2 A:HIS184 3.2 30.9 1.0 OD2 A:ASP186 3.5 40.3 1.0 O2 A:OGA303 3.8 35.3 1.0 ND1 A:HIS239 3.9 29.4 1.0 N1 A:OGA303 4.0 30.3 1.0 CG A:HIS239 4.0 29.9 1.0 NH1 A:ARG256 4.1 40.0 1.0 ND1 A:HIS184 4.1 33.1 1.0 CG A:HIS184 4.3 34.2 1.0 CB A:ASP186 4.3 34.5 1.0 CE A:MET229 4.7 31.2 1.0 CD1 A:LEU195 4.7 35.0 1.0 C4 A:OGA303 4.9 29.4 1.0 N A:ASP186 4.9 36.6 1.0

Y.Shi, H.Yang, J.Ding. Caenorhabditis Elegans Nmad-1 Functions As A Demethylase For Actin. J Mol Cell Biol 2023.
ISSN: ESSN 1759-4685
PubMed: 36764665
DOI: 10.1093/JMCB/MJAD008