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Magnesium in PDB 8hh6: F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp

Enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp

All present enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp (pdb code 8hh6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp, PDB code: 8hh6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 8hh6

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Magnesium binding site 1 out of 6 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:75.7
occ:1.00
OG1 A:THR176 2.0 76.4 1.0
O1G A:ATP600 2.0 84.5 1.0
O1B A:ATP600 3.0 84.5 1.0
CB A:THR176 3.3 76.4 1.0
PG A:ATP600 3.4 84.5 1.0
NE2 A:GLN200 3.6 73.8 1.0
OD1 A:ASP261 3.8 72.8 1.0
CG2 A:THR176 3.9 76.4 1.0
O3B A:ATP600 4.0 84.5 1.0
PB A:ATP600 4.0 84.5 1.0
OD2 A:ASP261 4.0 72.8 1.0
O2A A:ATP600 4.1 84.5 1.0
O2G A:ATP600 4.2 84.5 1.0
CG A:ASP261 4.4 72.8 1.0
CA A:THR176 4.4 76.4 1.0
N A:THR176 4.5 76.4 1.0
O3G A:ATP600 4.5 84.5 1.0
CD A:GLN200 4.7 73.8 1.0
O3A A:ATP600 4.9 84.5 1.0

Magnesium binding site 2 out of 6 in 8hh6

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Magnesium binding site 2 out of 6 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:76.2
occ:1.00
O2G B:ATP602 2.0 82.6 1.0
OG1 B:THR176 2.0 72.1 1.0
O2B B:ATP602 2.2 82.6 1.0
PG B:ATP602 3.2 82.6 1.0
O3B B:ATP602 3.3 82.6 1.0
PB B:ATP602 3.3 82.6 1.0
CB B:THR176 3.3 72.1 1.0
O1G B:ATP602 4.0 82.6 1.0
CG2 B:THR176 4.1 72.1 1.0
O1B B:ATP602 4.3 82.6 1.0
N B:THR176 4.3 72.1 1.0
O3G B:ATP602 4.3 82.6 1.0
O3A B:ATP602 4.4 82.6 1.0
CA B:THR176 4.4 72.1 1.0
O2A B:ATP602 4.5 82.6 1.0
NE2 B:GLN200 4.6 72.5 1.0
OD2 B:ASP261 4.7 69.2 1.0
PA B:ATP602 4.9 82.6 1.0
OD1 B:ASP261 5.0 69.2 1.0

Magnesium binding site 3 out of 6 in 8hh6

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Magnesium binding site 3 out of 6 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:62.6
occ:1.00
OG1 C:THR176 2.1 61.9 1.0
O1G C:ATP600 2.1 68.3 1.0
O2B C:ATP600 2.3 68.3 1.0
PG C:ATP600 3.1 68.3 1.0
O3B C:ATP600 3.2 68.3 1.0
CB C:THR176 3.3 61.9 1.0
PB C:ATP600 3.3 68.3 1.0
O2A C:ATP600 4.1 68.3 1.0
O2G C:ATP600 4.1 68.3 1.0
CG2 C:THR176 4.2 61.9 1.0
N C:THR176 4.2 61.9 1.0
O3G C:ATP600 4.3 68.3 1.0
O3A C:ATP600 4.3 68.3 1.0
CA C:THR176 4.3 61.9 1.0
O1B C:ATP600 4.4 68.3 1.0
PA C:ATP600 4.7 68.3 1.0
NE2 C:GLN200 4.7 67.4 1.0
OD1 C:ASP261 4.8 66.5 1.0
O1A C:ATP600 4.9 68.3 1.0

Magnesium binding site 4 out of 6 in 8hh6

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Magnesium binding site 4 out of 6 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:67.4
occ:1.00
O2 D:PO4603 2.0 73.7 1.0
OG1 D:THR165 2.0 67.9 1.0
O1B D:ADP602 2.3 71.4 1.0
P D:PO4603 3.4 73.7 1.0
CB D:THR165 3.5 67.9 1.0
PB D:ADP602 3.6 71.4 1.0
O4 D:PO4603 3.8 73.7 1.0
OE1 D:GLU194 3.8 74.1 1.0
N D:THR165 4.1 67.9 1.0
O2B D:ADP602 4.2 71.4 1.0
CG2 D:THR165 4.3 67.9 1.0
CA D:THR165 4.3 67.9 1.0
O3 D:PO4603 4.3 73.7 1.0
O1 D:PO4603 4.3 73.7 1.0
O1A D:ADP602 4.4 71.4 1.0
O3B D:ADP602 4.4 71.4 1.0
OD1 D:ASP252 4.4 72.5 1.0
NH2 D:ARG256 4.4 67.6 1.0
NH1 D:ARG191 4.4 70.6 1.0
OE2 D:GLU194 4.7 74.1 1.0
CD D:GLU194 4.7 74.1 1.0
O3A D:ADP602 4.7 71.4 1.0
PA D:ADP602 4.9 71.4 1.0

Magnesium binding site 5 out of 6 in 8hh6

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Magnesium binding site 5 out of 6 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:93.2
occ:1.00
OG1 E:THR165 2.1 88.0 1.0
O2B E:ATP501 2.5 95.7 1.0
O2G E:ATP501 2.6 95.7 1.0
PG E:ATP501 3.5 95.7 1.0
CB E:THR165 3.5 88.0 1.0
O3B E:ATP501 3.6 95.7 1.0
PB E:ATP501 3.6 95.7 1.0
O1G E:ATP501 3.9 95.7 1.0
N E:THR165 4.1 88.0 1.0
OE1 E:GLU194 4.2 83.3 1.0
CA E:THR165 4.3 88.0 1.0
CG2 E:THR165 4.4 88.0 1.0
O3A E:ATP501 4.6 95.7 1.0
O1B E:ATP501 4.7 95.7 1.0
O1A E:ATP501 4.7 95.7 1.0
O2A E:ATP501 4.8 95.7 1.0
O3G E:ATP501 4.9 95.7 1.0
PA E:ATP501 4.9 95.7 1.0
CB E:LYS164 5.0 88.4 1.0

Magnesium binding site 6 out of 6 in 8hh6

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Magnesium binding site 6 out of 6 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Highatp within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:65.3
occ:1.00
OG1 F:THR165 2.0 64.6 1.0
O3G F:ATP602 2.1 68.3 1.0
O2B F:ATP602 2.5 68.3 1.0
OE1 F:GLU190 3.3 72.8 1.0
PG F:ATP602 3.4 68.3 1.0
CB F:THR165 3.5 64.6 1.0
PB F:ATP602 3.7 68.3 1.0
O3B F:ATP602 3.7 68.3 1.0
CD F:GLU190 3.8 72.8 1.0
OE2 F:GLU190 3.8 72.8 1.0
O1G F:ATP602 3.9 68.3 1.0
NH1 F:ARG191 4.1 68.2 1.0
CG2 F:THR165 4.2 64.6 1.0
O1A F:ATP602 4.2 68.3 1.0
N F:THR165 4.2 64.6 1.0
CG F:LYS164 4.3 62.5 1.0
CA F:THR165 4.3 64.6 1.0
OE1 F:GLU194 4.4 73.4 1.0
CE F:LYS164 4.4 62.5 1.0
O2G F:ATP602 4.5 68.3 1.0
O3A F:ATP602 4.6 68.3 1.0
O1B F:ATP602 4.7 68.3 1.0
OD1 F:ASP252 4.7 70.6 1.0
NZ F:LYS164 4.8 62.5 1.0
OE2 F:GLU194 4.9 73.4 1.0
CG F:GLU190 5.0 72.8 1.0
CD F:LYS164 5.0 62.5 1.0

Reference:

A.Nakano, K.Yokoyama, J.Kishikawa, A.Nakanishi, K.Mitsuoka. Rotation Mechanism of Atp Synthases Driven By Atp Hydrolysis To Be Published.
Page generated: Thu Dec 28 09:12:25 2023

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