Magnesium in PDB 8hh9: F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp

All present enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp:
7.1.2.2;

The binding sites of Magnesium atom in the F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp (pdb code 8hh9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp, PDB code: 8hh9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:125.9 occ:1.00 O2A A:ATP600 2.0 126.2 1.0 O3A A:ATP600 2.2 126.2 1.0 O1B A:ATP600 2.2 126.2 1.0 PB A:ATP600 2.3 126.2 1.0 O3G A:ATP600 2.4 126.2 1.0 O3B A:ATP600 2.5 126.2 1.0 PA A:ATP600 2.5 126.2 1.0 PG A:ATP600 3.0 126.2 1.0 O1A A:ATP600 3.4 126.2 1.0 OG1 A:THR176 3.5 105.5 1.0 O2G A:ATP600 3.5 126.2 1.0 O5' A:ATP600 3.8 126.2 1.0 O2B A:ATP600 3.8 126.2 1.0 CB A:THR176 3.9 105.5 1.0 C5' A:ATP600 4.3 126.2 1.0 O1G A:ATP600 4.3 126.2 1.0 N A:THR176 4.6 105.5 1.0 CA A:THR176 4.9 105.5 1.0 OE1 A:GLN172 4.9 120.5 1.0 CG2 A:THR176 5.0 105.5 1.0

Magnesium binding site 2 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:113.0 occ:1.00 O2B B:ATP600 2.0 112.6 1.0 OG1 B:THR176 2.1 88.9 1.0 O2G B:ATP600 2.3 112.6 1.0 PB B:ATP600 2.4 112.6 1.0 O1B B:ATP600 2.5 112.6 1.0 O3B B:ATP600 2.9 112.6 1.0 PG B:ATP600 3.2 112.6 1.0 CB B:THR176 3.3 88.9 1.0 NE2 B:GLN200 3.7 75.0 1.0 N B:THR176 3.8 88.9 1.0 O3A B:ATP600 4.0 112.6 1.0 CA B:THR176 4.2 88.9 1.0 O1G B:ATP600 4.2 112.6 1.0 O3G B:ATP600 4.3 112.6 1.0 CG2 B:THR176 4.3 88.9 1.0 CD B:GLN200 4.7 75.0 1.0 O2A B:ATP600 4.7 112.6 1.0 OE1 B:GLN200 4.8 75.0 1.0 CB B:LYS175 4.9 87.9 1.0 C B:LYS175 4.9 87.9 1.0

Magnesium binding site 3 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:99.8 occ:1.00 O1G C:ATP602 2.0 97.9 1.0 O3B C:ATP602 2.1 97.9 1.0 O2B C:ATP602 2.1 97.9 1.0 OG1 C:THR176 2.4 85.7 1.0 PG C:ATP602 2.5 97.9 1.0 PB C:ATP602 2.6 97.9 1.0 CB C:THR176 3.3 85.7 1.0 O2A C:ATP602 3.4 97.9 1.0 O3G C:ATP602 3.4 97.9 1.0 O3A C:ATP602 3.5 97.9 1.0 O2G C:ATP602 3.7 97.9 1.0 O1B C:ATP602 3.8 97.9 1.0 PA C:ATP602 3.9 97.9 1.0 N C:THR176 4.1 85.7 1.0 O1A C:ATP602 4.3 97.9 1.0 CA C:THR176 4.4 85.7 1.0 CG2 C:THR176 4.4 85.7 1.0 NE2 C:GLN200 4.8 79.3 1.0 NE2 C:GLN172 4.9 92.1 1.0 NZ C:LYS175 4.9 87.3 1.0

Magnesium binding site 4 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:125.7 occ:1.00 OG1 D:THR165 2.1 122.0 1.0 O2B D:ADP603 2.3 129.6 1.0 PB D:ADP603 3.5 129.6 1.0 CB D:THR165 3.5 122.0 1.0 O1B D:ADP603 3.8 129.6 1.0 N D:THR165 3.9 122.0 1.0 OD1 D:ASP252 4.1 94.4 1.0 CA D:THR165 4.2 122.0 1.0 CG2 D:THR165 4.2 122.0 1.0 O1A D:ADP603 4.4 129.6 1.0 CE D:LYS164 4.4 122.1 1.0 CB D:LYS164 4.4 122.1 1.0 O3B D:ADP603 4.4 129.6 1.0 O4 D:PO4602 4.5 20.0 1.0 O2A D:ADP603 4.6 129.6 1.0 O3A D:ADP603 4.6 129.6 1.0 C D:LYS164 4.6 122.1 1.0 PA D:ADP603 4.7 129.6 1.0 OD2 D:ASP252 4.7 94.4 1.0 NZ D:LYS164 4.7 122.1 1.0 OE1 D:GLU190 4.8 96.7 1.0 CD D:GLU190 4.8 96.7 1.0 CG D:ASP252 4.8 94.4 1.0 CA D:LYS164 5.0 122.1 1.0

Magnesium binding site 5 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of F1 Domain of FOF1-Atpase From Bacillus PS3, 90 Degrees, Low Atp within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:82.7 occ:1.00 O2G F:ATP501 2.0 80.6 1.0 OG1 F:THR165 2.0 73.2 1.0 OE2 F:GLU190 2.2 77.9 1.0 OE2 F:GLU194 2.8 78.6 1.0 CB F:THR165 2.9 73.2 1.0 O1A F:ATP501 3.0 80.6 1.0 O2B F:ATP501 3.0 80.6 1.0 NH2 F:ARG191 3.1 75.6 1.0 CG2 F:THR165 3.3 73.2 1.0 OE1 F:GLU194 3.3 78.6 1.0 PG F:ATP501 3.4 80.6 1.0 CD F:GLU190 3.4 77.9 1.0 CD F:GLU194 3.5 78.6 1.0 O3B F:ATP501 3.9 80.6 1.0 PB F:ATP501 3.9 80.6 1.0 PA F:ATP501 4.0 80.6 1.0 O1G F:ATP501 4.1 80.6 1.0 O3A F:ATP501 4.1 80.6 1.0 OE1 F:GLU190 4.2 77.9 1.0 CA F:THR165 4.3 73.2 1.0 CG F:GLU190 4.3 77.9 1.0 CZ F:ARG191 4.4 75.6 1.0 O3G F:ATP501 4.4 80.6 1.0 O2A F:ATP501 4.6 80.6 1.0 N F:THR165 4.6 73.2 1.0 NH2 B:ARG365 4.9 81.7 1.0 CG F:GLU194 4.9 78.6 1.0 NH1 F:ARG191 5.0 75.6 1.0

A.Nakano, K.Yokoyama, J.Kishikawa, K.Mitsuoka. Rotation Mechanism of Atp Synthases Driven By Atp Hydrolysis To Be Published.