Magnesium in PDB 8hha: F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp

Enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp

All present enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp (pdb code 8hha). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp, PDB code: 8hha:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 8hha

Go back to Magnesium Binding Sites List in 8hha
Magnesium binding site 1 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:77.2
occ:1.00
O1G A:ATP600 2.1 95.8 1.0
OG1 A:THR176 2.3 78.0 1.0
OE1 A:GLN200 3.2 61.2 1.0
OD1 A:ASP261 3.3 61.4 1.0
PG A:ATP600 3.4 95.8 1.0
OD2 A:ASP261 3.5 61.4 1.0
CB A:THR176 3.6 78.0 1.0
CG A:ASP261 3.8 61.4 1.0
CG2 A:THR176 3.9 78.0 1.0
O2G A:ATP600 3.9 95.8 1.0
CD A:GLN200 3.9 61.2 1.0
O1B A:ATP600 4.4 95.8 1.0
O3G A:ATP600 4.4 95.8 1.0
O3B A:ATP600 4.5 95.8 1.0
CG A:GLN200 4.5 61.2 1.0
CA A:THR176 4.6 78.0 1.0
O2A A:ATP600 4.7 95.8 1.0
NE2 A:GLN200 4.8 61.2 1.0
N A:THR176 4.8 78.0 1.0
OH A:TYR195 4.8 50.8 1.0

Magnesium binding site 2 out of 5 in 8hha

Go back to Magnesium Binding Sites List in 8hha
Magnesium binding site 2 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:91.2
occ:1.00
O2G B:ATP600 2.4 94.8 1.0
NE2 B:GLN200 2.8 58.9 1.0
OG1 B:THR176 3.0 73.2 1.0
O2B B:ATP600 3.6 94.8 1.0
PG B:ATP600 3.7 94.8 1.0
O3B B:ATP600 3.8 94.8 1.0
CB B:THR176 4.0 73.2 1.0
CD B:GLN200 4.1 58.9 1.0
O2A B:ATP600 4.2 94.8 1.0
PB B:ATP600 4.3 94.8 1.0
CG2 B:THR204 4.5 56.6 1.0
CG2 B:THR176 4.5 73.2 1.0
OE1 B:GLN200 4.6 58.9 1.0
O3G B:ATP600 4.6 94.8 1.0
O1G B:ATP600 4.7 94.8 1.0
O3A B:ATP600 4.9 94.8 1.0

Magnesium binding site 3 out of 5 in 8hha

Go back to Magnesium Binding Sites List in 8hha
Magnesium binding site 3 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:58.3
occ:1.00
O1G C:ATP602 2.0 62.1 1.0
O2B C:ATP602 2.0 62.1 1.0
OG1 C:THR176 2.1 55.6 1.0
PG C:ATP602 2.7 62.1 1.0
O3B C:ATP602 2.8 62.1 1.0
PB C:ATP602 3.0 62.1 1.0
O3G C:ATP602 3.1 62.1 1.0
CB C:THR176 3.4 55.6 1.0
O1B C:ATP602 4.0 62.1 1.0
N C:THR176 4.0 55.6 1.0
O3A C:ATP602 4.1 62.1 1.0
O2G C:ATP602 4.2 62.1 1.0
CA C:THR176 4.2 55.6 1.0
O2A C:ATP602 4.3 62.1 1.0
CG2 C:THR176 4.4 55.6 1.0
PA C:ATP602 4.6 62.1 1.0
O1A C:ATP602 4.8 62.1 1.0
NZ C:LYS175 4.9 54.2 1.0
NE2 C:GLN200 4.9 53.4 1.0
CB C:LYS175 5.0 54.2 1.0

Magnesium binding site 4 out of 5 in 8hha

Go back to Magnesium Binding Sites List in 8hha
Magnesium binding site 4 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:66.9
occ:1.00
O4 D:PO4602 2.0 67.0 1.0
O3B D:ADP603 2.1 65.7 1.0
OG1 D:THR165 2.4 61.2 1.0
O3 D:PO4602 2.6 67.0 1.0
P D:PO4602 2.7 67.0 1.0
PB D:ADP603 3.1 65.7 1.0
O2B D:ADP603 3.3 65.7 1.0
O2 D:PO4602 3.5 67.0 1.0
CB D:THR165 3.8 61.2 1.0
O1 D:PO4602 4.0 67.0 1.0
O1B D:ADP603 4.0 65.7 1.0
N D:THR165 4.1 61.2 1.0
O2A D:ADP603 4.3 65.7 1.0
O3A D:ADP603 4.4 65.7 1.0
CA D:THR165 4.5 61.2 1.0
OD1 D:ASP252 4.5 55.9 1.0
CB D:LYS164 4.6 59.4 1.0
NZ D:LYS164 4.7 59.4 1.0
CE D:LYS164 4.7 59.4 1.0
NH1 D:ARG191 4.7 58.4 1.0
CG2 D:THR165 4.8 61.2 1.0
OE1 D:GLU194 4.8 62.7 1.0
PA D:ADP603 4.9 65.7 1.0
C D:LYS164 5.0 59.4 1.0

Magnesium binding site 5 out of 5 in 8hha

Go back to Magnesium Binding Sites List in 8hha
Magnesium binding site 5 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg601

b:57.4
occ:1.00
OG1 F:THR165 2.1 53.6 1.0
OE1 F:GLU190 2.1 58.3 1.0
O3G F:ATP602 2.2 62.0 1.0
OE2 F:GLU194 2.9 62.4 1.0
NH1 F:ARG191 3.2 57.9 1.0
CB F:THR165 3.3 53.6 1.0
CD F:GLU190 3.3 58.3 1.0
OE1 F:GLU194 3.4 62.4 1.0
O2B F:ATP602 3.4 62.0 1.0
CD F:GLU194 3.5 62.4 1.0
CG2 F:THR165 3.6 53.6 1.0
PG F:ATP602 3.7 62.0 1.0
OE2 F:GLU190 4.0 58.3 1.0
CG F:GLU190 4.4 58.3 1.0
CA F:THR165 4.5 53.6 1.0
CZ F:ARG191 4.5 57.9 1.0
O3B F:ATP602 4.5 62.0 1.0
O2G F:ATP602 4.5 62.0 1.0
O1G F:ATP602 4.5 62.0 1.0
PB F:ATP602 4.6 62.0 1.0
OD1 F:ASP252 4.6 54.3 1.0
N F:THR165 4.8 53.6 1.0
CB F:GLU190 4.9 58.3 1.0
NH1 B:ARG365 5.0 65.4 1.0

Reference:

A.Nakano, K.Yokoyama, J.Kishikawa, K.Mitsuoka. Rotation Mechanism of Atp Synthases Driven By Atp Hydrolysis To Be Published.
Page generated: Fri Jul 28 00:53:57 2023

Last articles

Mg in 8GHU
Mg in 8G7N
Mg in 8GIY
Mg in 8GHF
Mg in 8GIP
Mg in 8GIM
Mg in 8GIN
Mg in 8GFT
Mg in 8GI6
Mg in 8GCQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy