Magnesium in PDB 8hha: F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp
Enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp
All present enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp:
7.1.2.2;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp
(pdb code 8hha). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp, PDB code: 8hha:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 8hha
Go back to
Magnesium Binding Sites List in 8hha
Magnesium binding site 1 out
of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:77.2
occ:1.00
|
O1G
|
A:ATP600
|
2.1
|
95.8
|
1.0
|
OG1
|
A:THR176
|
2.3
|
78.0
|
1.0
|
OE1
|
A:GLN200
|
3.2
|
61.2
|
1.0
|
OD1
|
A:ASP261
|
3.3
|
61.4
|
1.0
|
PG
|
A:ATP600
|
3.4
|
95.8
|
1.0
|
OD2
|
A:ASP261
|
3.5
|
61.4
|
1.0
|
CB
|
A:THR176
|
3.6
|
78.0
|
1.0
|
CG
|
A:ASP261
|
3.8
|
61.4
|
1.0
|
CG2
|
A:THR176
|
3.9
|
78.0
|
1.0
|
O2G
|
A:ATP600
|
3.9
|
95.8
|
1.0
|
CD
|
A:GLN200
|
3.9
|
61.2
|
1.0
|
O1B
|
A:ATP600
|
4.4
|
95.8
|
1.0
|
O3G
|
A:ATP600
|
4.4
|
95.8
|
1.0
|
O3B
|
A:ATP600
|
4.5
|
95.8
|
1.0
|
CG
|
A:GLN200
|
4.5
|
61.2
|
1.0
|
CA
|
A:THR176
|
4.6
|
78.0
|
1.0
|
O2A
|
A:ATP600
|
4.7
|
95.8
|
1.0
|
NE2
|
A:GLN200
|
4.8
|
61.2
|
1.0
|
N
|
A:THR176
|
4.8
|
78.0
|
1.0
|
OH
|
A:TYR195
|
4.8
|
50.8
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 8hha
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Magnesium Binding Sites List in 8hha
Magnesium binding site 2 out
of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:91.2
occ:1.00
|
O2G
|
B:ATP600
|
2.4
|
94.8
|
1.0
|
NE2
|
B:GLN200
|
2.8
|
58.9
|
1.0
|
OG1
|
B:THR176
|
3.0
|
73.2
|
1.0
|
O2B
|
B:ATP600
|
3.6
|
94.8
|
1.0
|
PG
|
B:ATP600
|
3.7
|
94.8
|
1.0
|
O3B
|
B:ATP600
|
3.8
|
94.8
|
1.0
|
CB
|
B:THR176
|
4.0
|
73.2
|
1.0
|
CD
|
B:GLN200
|
4.1
|
58.9
|
1.0
|
O2A
|
B:ATP600
|
4.2
|
94.8
|
1.0
|
PB
|
B:ATP600
|
4.3
|
94.8
|
1.0
|
CG2
|
B:THR204
|
4.5
|
56.6
|
1.0
|
CG2
|
B:THR176
|
4.5
|
73.2
|
1.0
|
OE1
|
B:GLN200
|
4.6
|
58.9
|
1.0
|
O3G
|
B:ATP600
|
4.6
|
94.8
|
1.0
|
O1G
|
B:ATP600
|
4.7
|
94.8
|
1.0
|
O3A
|
B:ATP600
|
4.9
|
94.8
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 8hha
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Magnesium Binding Sites List in 8hha
Magnesium binding site 3 out
of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg601
b:58.3
occ:1.00
|
O1G
|
C:ATP602
|
2.0
|
62.1
|
1.0
|
O2B
|
C:ATP602
|
2.0
|
62.1
|
1.0
|
OG1
|
C:THR176
|
2.1
|
55.6
|
1.0
|
PG
|
C:ATP602
|
2.7
|
62.1
|
1.0
|
O3B
|
C:ATP602
|
2.8
|
62.1
|
1.0
|
PB
|
C:ATP602
|
3.0
|
62.1
|
1.0
|
O3G
|
C:ATP602
|
3.1
|
62.1
|
1.0
|
CB
|
C:THR176
|
3.4
|
55.6
|
1.0
|
O1B
|
C:ATP602
|
4.0
|
62.1
|
1.0
|
N
|
C:THR176
|
4.0
|
55.6
|
1.0
|
O3A
|
C:ATP602
|
4.1
|
62.1
|
1.0
|
O2G
|
C:ATP602
|
4.2
|
62.1
|
1.0
|
CA
|
C:THR176
|
4.2
|
55.6
|
1.0
|
O2A
|
C:ATP602
|
4.3
|
62.1
|
1.0
|
CG2
|
C:THR176
|
4.4
|
55.6
|
1.0
|
PA
|
C:ATP602
|
4.6
|
62.1
|
1.0
|
O1A
|
C:ATP602
|
4.8
|
62.1
|
1.0
|
NZ
|
C:LYS175
|
4.9
|
54.2
|
1.0
|
NE2
|
C:GLN200
|
4.9
|
53.4
|
1.0
|
CB
|
C:LYS175
|
5.0
|
54.2
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 8hha
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Magnesium Binding Sites List in 8hha
Magnesium binding site 4 out
of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg601
b:66.9
occ:1.00
|
O4
|
D:PO4602
|
2.0
|
67.0
|
1.0
|
O3B
|
D:ADP603
|
2.1
|
65.7
|
1.0
|
OG1
|
D:THR165
|
2.4
|
61.2
|
1.0
|
O3
|
D:PO4602
|
2.6
|
67.0
|
1.0
|
P
|
D:PO4602
|
2.7
|
67.0
|
1.0
|
PB
|
D:ADP603
|
3.1
|
65.7
|
1.0
|
O2B
|
D:ADP603
|
3.3
|
65.7
|
1.0
|
O2
|
D:PO4602
|
3.5
|
67.0
|
1.0
|
CB
|
D:THR165
|
3.8
|
61.2
|
1.0
|
O1
|
D:PO4602
|
4.0
|
67.0
|
1.0
|
O1B
|
D:ADP603
|
4.0
|
65.7
|
1.0
|
N
|
D:THR165
|
4.1
|
61.2
|
1.0
|
O2A
|
D:ADP603
|
4.3
|
65.7
|
1.0
|
O3A
|
D:ADP603
|
4.4
|
65.7
|
1.0
|
CA
|
D:THR165
|
4.5
|
61.2
|
1.0
|
OD1
|
D:ASP252
|
4.5
|
55.9
|
1.0
|
CB
|
D:LYS164
|
4.6
|
59.4
|
1.0
|
NZ
|
D:LYS164
|
4.7
|
59.4
|
1.0
|
CE
|
D:LYS164
|
4.7
|
59.4
|
1.0
|
NH1
|
D:ARG191
|
4.7
|
58.4
|
1.0
|
CG2
|
D:THR165
|
4.8
|
61.2
|
1.0
|
OE1
|
D:GLU194
|
4.8
|
62.7
|
1.0
|
PA
|
D:ADP603
|
4.9
|
65.7
|
1.0
|
C
|
D:LYS164
|
5.0
|
59.4
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 8hha
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Magnesium Binding Sites List in 8hha
Magnesium binding site 5 out
of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of F1 Domain of FOF1-Atpase From Bacillus PS3,120 Degrees,Lowatp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg601
b:57.4
occ:1.00
|
OG1
|
F:THR165
|
2.1
|
53.6
|
1.0
|
OE1
|
F:GLU190
|
2.1
|
58.3
|
1.0
|
O3G
|
F:ATP602
|
2.2
|
62.0
|
1.0
|
OE2
|
F:GLU194
|
2.9
|
62.4
|
1.0
|
NH1
|
F:ARG191
|
3.2
|
57.9
|
1.0
|
CB
|
F:THR165
|
3.3
|
53.6
|
1.0
|
CD
|
F:GLU190
|
3.3
|
58.3
|
1.0
|
OE1
|
F:GLU194
|
3.4
|
62.4
|
1.0
|
O2B
|
F:ATP602
|
3.4
|
62.0
|
1.0
|
CD
|
F:GLU194
|
3.5
|
62.4
|
1.0
|
CG2
|
F:THR165
|
3.6
|
53.6
|
1.0
|
PG
|
F:ATP602
|
3.7
|
62.0
|
1.0
|
OE2
|
F:GLU190
|
4.0
|
58.3
|
1.0
|
CG
|
F:GLU190
|
4.4
|
58.3
|
1.0
|
CA
|
F:THR165
|
4.5
|
53.6
|
1.0
|
CZ
|
F:ARG191
|
4.5
|
57.9
|
1.0
|
O3B
|
F:ATP602
|
4.5
|
62.0
|
1.0
|
O2G
|
F:ATP602
|
4.5
|
62.0
|
1.0
|
O1G
|
F:ATP602
|
4.5
|
62.0
|
1.0
|
PB
|
F:ATP602
|
4.6
|
62.0
|
1.0
|
OD1
|
F:ASP252
|
4.6
|
54.3
|
1.0
|
N
|
F:THR165
|
4.8
|
53.6
|
1.0
|
CB
|
F:GLU190
|
4.9
|
58.3
|
1.0
|
NH1
|
B:ARG365
|
5.0
|
65.4
|
1.0
|
|
Reference:
A.Nakano,
K.Yokoyama,
J.Kishikawa,
K.Mitsuoka.
Rotation Mechanism of Atp Synthases Driven By Atp Hydrolysis To Be Published.
Page generated: Fri Jul 28 00:53:57 2023
|