Magnesium in PDB 8hhb: F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp
Enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp
All present enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp:
7.1.2.2;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp
(pdb code 8hhb). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp, PDB code: 8hhb:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 8hhb
Go back to
Magnesium Binding Sites List in 8hhb
Magnesium binding site 1 out
of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:86.4
occ:1.00
|
O1G
|
A:ATP600
|
2.1
|
105.3
|
1.0
|
OG1
|
A:THR176
|
2.1
|
86.7
|
1.0
|
CB
|
A:THR176
|
3.3
|
86.7
|
1.0
|
OD2
|
A:ASP261
|
3.5
|
74.4
|
1.0
|
PG
|
A:ATP600
|
3.5
|
105.3
|
1.0
|
CG2
|
A:THR176
|
3.5
|
86.7
|
1.0
|
OE1
|
A:GLN200
|
3.6
|
76.4
|
1.0
|
OD1
|
A:ASP261
|
4.2
|
74.4
|
1.0
|
O2G
|
A:ATP600
|
4.2
|
105.3
|
1.0
|
CG
|
A:ASP261
|
4.2
|
74.4
|
1.0
|
O1B
|
A:ATP600
|
4.3
|
105.3
|
1.0
|
O3B
|
A:ATP600
|
4.3
|
105.3
|
1.0
|
O2A
|
A:ATP600
|
4.3
|
105.3
|
1.0
|
CA
|
A:THR176
|
4.5
|
86.7
|
1.0
|
O3G
|
A:ATP600
|
4.5
|
105.3
|
1.0
|
CD
|
A:GLN200
|
4.6
|
76.4
|
1.0
|
CG2
|
A:THR204
|
4.6
|
75.5
|
1.0
|
OH
|
A:TYR195
|
4.6
|
59.9
|
1.0
|
CG
|
A:GLN200
|
4.8
|
76.4
|
1.0
|
N
|
A:THR176
|
4.8
|
86.7
|
1.0
|
PB
|
A:ATP600
|
4.9
|
105.3
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 8hhb
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Magnesium Binding Sites List in 8hhb
Magnesium binding site 2 out
of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:86.8
occ:1.00
|
O2G
|
B:ATP600
|
2.2
|
110.4
|
1.0
|
OG1
|
B:THR176
|
2.5
|
87.8
|
1.0
|
NE2
|
B:GLN200
|
3.0
|
71.1
|
1.0
|
O2B
|
B:ATP600
|
3.3
|
110.4
|
1.0
|
PG
|
B:ATP600
|
3.6
|
110.4
|
1.0
|
CB
|
B:THR176
|
3.8
|
87.8
|
1.0
|
CD
|
B:GLN200
|
4.0
|
71.1
|
1.0
|
OD2
|
B:ASP261
|
4.0
|
69.2
|
1.0
|
O3G
|
B:ATP600
|
4.1
|
110.4
|
1.0
|
O3B
|
B:ATP600
|
4.2
|
110.4
|
1.0
|
CG2
|
B:THR176
|
4.3
|
87.8
|
1.0
|
PB
|
B:ATP600
|
4.4
|
110.4
|
1.0
|
OE1
|
B:GLN200
|
4.5
|
71.1
|
1.0
|
OD1
|
B:ASP261
|
4.5
|
69.2
|
1.0
|
CG
|
B:ASP261
|
4.7
|
69.2
|
1.0
|
O1G
|
B:ATP600
|
4.8
|
110.4
|
1.0
|
CG2
|
B:THR204
|
4.8
|
68.5
|
1.0
|
CA
|
B:THR176
|
4.9
|
87.8
|
1.0
|
N
|
B:THR176
|
5.0
|
87.8
|
1.0
|
O2A
|
B:ATP600
|
5.0
|
110.4
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 8hhb
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Magnesium Binding Sites List in 8hhb
Magnesium binding site 3 out
of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg601
b:74.9
occ:1.00
|
O1G
|
C:ATP602
|
2.0
|
77.0
|
1.0
|
O2B
|
C:ATP602
|
2.0
|
77.0
|
1.0
|
OG1
|
C:THR176
|
2.2
|
69.0
|
1.0
|
PG
|
C:ATP602
|
3.1
|
77.0
|
1.0
|
PB
|
C:ATP602
|
3.2
|
77.0
|
1.0
|
O3B
|
C:ATP602
|
3.2
|
77.0
|
1.0
|
CB
|
C:THR176
|
3.5
|
69.0
|
1.0
|
O3G
|
C:ATP602
|
4.0
|
77.0
|
1.0
|
O1B
|
C:ATP602
|
4.0
|
77.0
|
1.0
|
N
|
C:THR176
|
4.1
|
69.0
|
1.0
|
O2G
|
C:ATP602
|
4.3
|
77.0
|
1.0
|
O3A
|
C:ATP602
|
4.3
|
77.0
|
1.0
|
CA
|
C:THR176
|
4.3
|
69.0
|
1.0
|
CG2
|
C:THR176
|
4.5
|
69.0
|
1.0
|
OD2
|
C:ASP261
|
4.8
|
65.9
|
1.0
|
O2A
|
C:ATP602
|
4.8
|
77.0
|
1.0
|
NE2
|
C:GLN200
|
4.8
|
67.8
|
1.0
|
O1A
|
C:ATP602
|
4.9
|
77.0
|
1.0
|
PA
|
C:ATP602
|
4.9
|
77.0
|
1.0
|
CB
|
C:LYS175
|
4.9
|
68.1
|
1.0
|
OD1
|
C:ASP261
|
4.9
|
65.9
|
1.0
|
NZ
|
C:LYS175
|
4.9
|
68.1
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 8hhb
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Magnesium Binding Sites List in 8hhb
Magnesium binding site 4 out
of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg601
b:72.5
occ:1.00
|
O2
|
D:PO4602
|
2.0
|
81.2
|
1.0
|
O3B
|
D:ADP603
|
2.1
|
72.9
|
1.0
|
OG1
|
D:THR165
|
2.1
|
69.1
|
1.0
|
PB
|
D:ADP603
|
3.2
|
72.9
|
1.0
|
P
|
D:PO4602
|
3.4
|
81.2
|
1.0
|
O2B
|
D:ADP603
|
3.5
|
72.9
|
1.0
|
CB
|
D:THR165
|
3.5
|
69.1
|
1.0
|
O2A
|
D:ADP603
|
4.0
|
72.9
|
1.0
|
N
|
D:THR165
|
4.0
|
69.1
|
1.0
|
O1B
|
D:ADP603
|
4.0
|
72.9
|
1.0
|
O1
|
D:PO4602
|
4.1
|
81.2
|
1.0
|
OE1
|
D:GLU194
|
4.1
|
73.5
|
1.0
|
O3
|
D:PO4602
|
4.2
|
81.2
|
1.0
|
NH1
|
D:ARG191
|
4.2
|
69.8
|
1.0
|
O4
|
D:PO4602
|
4.3
|
81.2
|
1.0
|
CA
|
D:THR165
|
4.3
|
69.1
|
1.0
|
NZ
|
D:LYS164
|
4.3
|
69.4
|
1.0
|
O3A
|
D:ADP603
|
4.4
|
72.9
|
1.0
|
CG2
|
D:THR165
|
4.4
|
69.1
|
1.0
|
CE
|
D:LYS164
|
4.6
|
69.4
|
1.0
|
NH2
|
D:ARG256
|
4.6
|
68.3
|
1.0
|
PA
|
D:ADP603
|
4.7
|
72.9
|
1.0
|
OE2
|
D:GLU194
|
4.8
|
73.5
|
1.0
|
CB
|
D:LYS164
|
4.8
|
69.4
|
1.0
|
CD
|
D:GLU194
|
4.9
|
73.5
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 8hhb
Go back to
Magnesium Binding Sites List in 8hhb
Magnesium binding site 5 out
of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg502
b:67.9
occ:1.00
|
O2G
|
F:ATP501
|
1.9
|
73.4
|
1.0
|
OG1
|
F:THR165
|
1.9
|
66.2
|
1.0
|
OE1
|
F:GLU190
|
2.4
|
71.9
|
1.0
|
PG
|
F:ATP501
|
3.1
|
73.4
|
1.0
|
O2B
|
F:ATP501
|
3.2
|
73.4
|
1.0
|
CB
|
F:THR165
|
3.2
|
66.2
|
1.0
|
CD
|
F:GLU190
|
3.4
|
71.9
|
1.0
|
OE1
|
F:GLU194
|
3.5
|
75.6
|
1.0
|
O3G
|
F:ATP501
|
3.5
|
73.4
|
1.0
|
O3B
|
F:ATP501
|
3.5
|
73.4
|
1.0
|
NH1
|
F:ARG191
|
3.7
|
69.2
|
1.0
|
OE2
|
F:GLU194
|
3.7
|
75.6
|
1.0
|
CG2
|
F:THR165
|
3.8
|
66.2
|
1.0
|
OE2
|
F:GLU190
|
4.0
|
71.9
|
1.0
|
CD
|
F:GLU194
|
4.0
|
75.6
|
1.0
|
PB
|
F:ATP501
|
4.0
|
73.4
|
1.0
|
CA
|
F:THR165
|
4.3
|
66.2
|
1.0
|
CG
|
F:GLU190
|
4.3
|
71.9
|
1.0
|
O1G
|
F:ATP501
|
4.4
|
73.4
|
1.0
|
N
|
F:THR165
|
4.5
|
66.2
|
1.0
|
OD1
|
F:ASP252
|
4.7
|
69.0
|
1.0
|
NH1
|
B:ARG365
|
4.9
|
74.8
|
1.0
|
CZ
|
F:ARG191
|
5.0
|
69.2
|
1.0
|
|
Reference:
A.Nakano,
K.Yokoyama,
J.Kishikawa,
K.Mitsuoka.
Rotation Mechanism of Atp Synthases Driven By Atp Hydrolysis To Be Published.
Page generated: Fri Jul 28 00:53:57 2023
|