Magnesium in PDB 8hhb: F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp

Enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp

All present enzymatic activity of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp:
7.1.2.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp (pdb code 8hhb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp, PDB code: 8hhb:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 8hhb

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Magnesium binding site 1 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:86.4
occ:1.00
O1G A:ATP600 2.1 105.3 1.0
OG1 A:THR176 2.1 86.7 1.0
CB A:THR176 3.3 86.7 1.0
OD2 A:ASP261 3.5 74.4 1.0
PG A:ATP600 3.5 105.3 1.0
CG2 A:THR176 3.5 86.7 1.0
OE1 A:GLN200 3.6 76.4 1.0
OD1 A:ASP261 4.2 74.4 1.0
O2G A:ATP600 4.2 105.3 1.0
CG A:ASP261 4.2 74.4 1.0
O1B A:ATP600 4.3 105.3 1.0
O3B A:ATP600 4.3 105.3 1.0
O2A A:ATP600 4.3 105.3 1.0
CA A:THR176 4.5 86.7 1.0
O3G A:ATP600 4.5 105.3 1.0
CD A:GLN200 4.6 76.4 1.0
CG2 A:THR204 4.6 75.5 1.0
OH A:TYR195 4.6 59.9 1.0
CG A:GLN200 4.8 76.4 1.0
N A:THR176 4.8 86.7 1.0
PB A:ATP600 4.9 105.3 1.0

Magnesium binding site 2 out of 5 in 8hhb

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Magnesium binding site 2 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:86.8
occ:1.00
O2G B:ATP600 2.2 110.4 1.0
OG1 B:THR176 2.5 87.8 1.0
NE2 B:GLN200 3.0 71.1 1.0
O2B B:ATP600 3.3 110.4 1.0
PG B:ATP600 3.6 110.4 1.0
CB B:THR176 3.8 87.8 1.0
CD B:GLN200 4.0 71.1 1.0
OD2 B:ASP261 4.0 69.2 1.0
O3G B:ATP600 4.1 110.4 1.0
O3B B:ATP600 4.2 110.4 1.0
CG2 B:THR176 4.3 87.8 1.0
PB B:ATP600 4.4 110.4 1.0
OE1 B:GLN200 4.5 71.1 1.0
OD1 B:ASP261 4.5 69.2 1.0
CG B:ASP261 4.7 69.2 1.0
O1G B:ATP600 4.8 110.4 1.0
CG2 B:THR204 4.8 68.5 1.0
CA B:THR176 4.9 87.8 1.0
N B:THR176 5.0 87.8 1.0
O2A B:ATP600 5.0 110.4 1.0

Magnesium binding site 3 out of 5 in 8hhb

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Magnesium binding site 3 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:74.9
occ:1.00
O1G C:ATP602 2.0 77.0 1.0
O2B C:ATP602 2.0 77.0 1.0
OG1 C:THR176 2.2 69.0 1.0
PG C:ATP602 3.1 77.0 1.0
PB C:ATP602 3.2 77.0 1.0
O3B C:ATP602 3.2 77.0 1.0
CB C:THR176 3.5 69.0 1.0
O3G C:ATP602 4.0 77.0 1.0
O1B C:ATP602 4.0 77.0 1.0
N C:THR176 4.1 69.0 1.0
O2G C:ATP602 4.3 77.0 1.0
O3A C:ATP602 4.3 77.0 1.0
CA C:THR176 4.3 69.0 1.0
CG2 C:THR176 4.5 69.0 1.0
OD2 C:ASP261 4.8 65.9 1.0
O2A C:ATP602 4.8 77.0 1.0
NE2 C:GLN200 4.8 67.8 1.0
O1A C:ATP602 4.9 77.0 1.0
PA C:ATP602 4.9 77.0 1.0
CB C:LYS175 4.9 68.1 1.0
OD1 C:ASP261 4.9 65.9 1.0
NZ C:LYS175 4.9 68.1 1.0

Magnesium binding site 4 out of 5 in 8hhb

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Magnesium binding site 4 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg601

b:72.5
occ:1.00
O2 D:PO4602 2.0 81.2 1.0
O3B D:ADP603 2.1 72.9 1.0
OG1 D:THR165 2.1 69.1 1.0
PB D:ADP603 3.2 72.9 1.0
P D:PO4602 3.4 81.2 1.0
O2B D:ADP603 3.5 72.9 1.0
CB D:THR165 3.5 69.1 1.0
O2A D:ADP603 4.0 72.9 1.0
N D:THR165 4.0 69.1 1.0
O1B D:ADP603 4.0 72.9 1.0
O1 D:PO4602 4.1 81.2 1.0
OE1 D:GLU194 4.1 73.5 1.0
O3 D:PO4602 4.2 81.2 1.0
NH1 D:ARG191 4.2 69.8 1.0
O4 D:PO4602 4.3 81.2 1.0
CA D:THR165 4.3 69.1 1.0
NZ D:LYS164 4.3 69.4 1.0
O3A D:ADP603 4.4 72.9 1.0
CG2 D:THR165 4.4 69.1 1.0
CE D:LYS164 4.6 69.4 1.0
NH2 D:ARG256 4.6 68.3 1.0
PA D:ADP603 4.7 72.9 1.0
OE2 D:GLU194 4.8 73.5 1.0
CB D:LYS164 4.8 69.4 1.0
CD D:GLU194 4.9 73.5 1.0

Magnesium binding site 5 out of 5 in 8hhb

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Magnesium binding site 5 out of 5 in the F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of F1 Domain of FOF1-Atpase From Bacillus PS3,Step Waiting,Lowatp within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg502

b:67.9
occ:1.00
O2G F:ATP501 1.9 73.4 1.0
OG1 F:THR165 1.9 66.2 1.0
OE1 F:GLU190 2.4 71.9 1.0
PG F:ATP501 3.1 73.4 1.0
O2B F:ATP501 3.2 73.4 1.0
CB F:THR165 3.2 66.2 1.0
CD F:GLU190 3.4 71.9 1.0
OE1 F:GLU194 3.5 75.6 1.0
O3G F:ATP501 3.5 73.4 1.0
O3B F:ATP501 3.5 73.4 1.0
NH1 F:ARG191 3.7 69.2 1.0
OE2 F:GLU194 3.7 75.6 1.0
CG2 F:THR165 3.8 66.2 1.0
OE2 F:GLU190 4.0 71.9 1.0
CD F:GLU194 4.0 75.6 1.0
PB F:ATP501 4.0 73.4 1.0
CA F:THR165 4.3 66.2 1.0
CG F:GLU190 4.3 71.9 1.0
O1G F:ATP501 4.4 73.4 1.0
N F:THR165 4.5 66.2 1.0
OD1 F:ASP252 4.7 69.0 1.0
NH1 B:ARG365 4.9 74.8 1.0
CZ F:ARG191 5.0 69.2 1.0

Reference:

A.Nakano, K.Yokoyama, J.Kishikawa, K.Mitsuoka. Rotation Mechanism of Atp Synthases Driven By Atp Hydrolysis To Be Published.
Page generated: Fri Jul 28 00:53:57 2023

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