Magnesium in PDB 8hhm: Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Ternary Complex Intermediate State

Other elements in 8hhm:

The structure of Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Ternary Complex Intermediate State also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Ternary Complex Intermediate State (pdb code 8hhm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Ternary Complex Intermediate State, PDB code: 8hhm:

Magnesium binding site 1 out of 1 in 8hhm

Go back to Magnesium Binding Sites List in 8hhm
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Ternary Complex Intermediate State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the CAS12M2-Crrna-Target Dna Ternary Complex Intermediate State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg101

b:79.4
occ:1.00
OP1 B:G-22 2.1 81.2 1.0
OP2 B:C-21 2.9 84.5 1.0
P B:G-22 3.5 80.4 1.0
OP1 B:A-23 3.7 58.7 1.0
OP2 B:C-24 4.1 70.5 1.0
OP2 B:G-22 4.2 77.0 1.0
P B:C-21 4.3 103.0 1.0
O5' B:G-22 4.3 72.1 1.0
OP1 B:C-24 4.3 75.3 1.0
P B:C-24 4.5 69.0 1.0
C3' B:A-23 4.5 68.7 1.0
O3' B:A-23 4.6 69.7 1.0
C5' B:A-23 4.7 65.9 1.0
C5' B:G-22 4.7 73.0 1.0
C4' B:A-23 4.8 71.7 1.0
O5' B:C-24 4.8 76.0 1.0
OP1 B:C-21 4.8 77.9 1.0

Reference:

S.Omura, N.S.Omura, R.Nakagawa, Y.W.Wu, C.Sudfeld, V.R.Warren, H.Hirano, T.Kusakizako, Y.Kise, H.G.J.Lebbink, Y.Itoh, V.D.J.Oost, O.Nureki. N/A N/A.
Page generated: Tue Apr 25 23:39:24 2023

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