Magnesium in PDB 8hil: A Cryo-Em Structure of B. Oleracea Rna Polymerase V at 3.57 Angstrom

The structure of A Cryo-Em Structure of B. Oleracea Rna Polymerase V at 3.57 Angstrom also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

The binding sites of Magnesium atom in the A Cryo-Em Structure of B. Oleracea Rna Polymerase V at 3.57 Angstrom (pdb code 8hil). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the A Cryo-Em Structure of B. Oleracea Rna Polymerase V at 3.57 Angstrom, PDB code: 8hil:

Magnesium binding site 1 out of 1 in the A Cryo-Em Structure of B. Oleracea Rna Polymerase V at 3.57 Angstrom


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A Cryo-Em Structure of B. Oleracea Rna Polymerase V at 3.57 Angstrom within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2102 b:78.9 occ:1.00 O A:ASP449 2.1 64.7 1.0 OD2 A:ASP453 2.2 80.6 1.0 CG A:ASP453 2.3 80.6 1.0 CB A:ASP453 2.6 80.6 1.0 N A:ASP453 2.8 80.6 1.0 OD1 A:ASP453 3.1 80.6 1.0 C A:ASP449 3.1 64.7 1.0 CA A:ASP453 3.3 80.6 1.0 N A:ASP451 3.7 57.0 1.0 CA A:PHE450 3.7 53.1 1.0 N A:GLY452 3.7 66.4 1.0 OD1 A:ASP449 3.8 64.7 1.0 N A:PHE450 3.8 53.1 1.0 C A:GLY452 3.9 66.4 1.0 CG1 A:ILE328 3.9 45.8 1.0 N A:ASP449 4.0 64.7 1.0 OD1 A:ASP451 4.1 57.0 1.0 C A:PHE450 4.1 53.1 1.0 CA A:ASP449 4.2 64.7 1.0 CD1 A:ILE328 4.3 45.8 1.0 CA A:GLY452 4.3 66.4 1.0 C A:ASP453 4.3 80.6 1.0 C A:ASP451 4.5 57.0 1.0 O A:ASP453 4.5 80.6 1.0 CB A:ALA448 4.6 69.8 1.0 CD1 A:PHE450 4.6 53.1 1.0 CG A:ASP449 4.6 64.7 1.0 CA A:ASP451 4.6 57.0 1.0 O A:GLY452 4.9 66.4 1.0 O A:ILE328 4.9 45.8 1.0 C A:ALA448 4.9 69.8 1.0 CB A:ASP449 5.0 64.7 1.0 CB A:PHE450 5.0 53.1 1.0

G.Xie, X.Du, H.Hu, S.Li, X.Cao, S.E.Jacobsen, J.Du. Structure and Mechanism of the Plant Rna Polymerase V. Science F8231 2023.
ISSN: ESSN 1095-9203
PubMed: 36893216
DOI: 10.1126/SCIENCE.ADF8231