Magnesium in PDB 8huj: Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A

All present enzymatic activity of Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A:
3.6.4.13;

The binding sites of Magnesium atom in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A (pdb code 8huj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A, PDB code: 8huj:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg801 b:71.8 occ:1.00 N7 C:G728 3.2 72.1 1.0 O6 C:G728 3.3 72.1 1.0 C5 C:G728 3.9 72.1 1.0 C6 C:G728 3.9 72.1 1.0 O6 C:G729 4.0 70.7 1.0 C8 C:G728 4.3 72.1 1.0 O4 C:U727 4.4 71.0 1.0 N7 C:G729 4.6 70.7 1.0 C4 C:U727 4.7 71.0 1.0 C5 C:U727 4.7 71.0 1.0 C6 C:G729 4.9 70.7 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg802 b:65.9 occ:1.00 OP2 C:A691 4.1 59.4 1.0 OP2 C:G729 4.2 70.7 1.0 OP2 C:G730 4.5 66.1 1.0 N7 C:G730 4.7 66.1 1.0 OP1 C:G690 4.7 67.1 1.0 OP1 C:A691 4.7 59.4 1.0 P C:A691 4.9 59.4 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the J-K-St Region of Emcv Ires in Complex with EIF4G-HEAT1 and EIF4A within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg803 b:61.2 occ:1.00 O4 C:U703 3.7 62.7 1.0 N7 C:G701 3.9 67.0 1.0 N7 C:G702 4.0 62.9 1.0 O6 C:G702 4.3 62.9 1.0 O6 C:G701 4.4 67.0 1.0 C5 C:G701 4.4 67.0 1.0 C8 C:G701 4.6 67.0 1.0 C6 C:G701 4.7 67.0 1.0 C4 C:U703 4.7 62.7 1.0 OP2 C:A700 4.8 69.3 1.0 C5 C:G702 4.8 62.9 1.0 OP2 C:G701 4.9 67.0 1.0 C6 C:G702 4.9 62.9 1.0 C8 C:G702 5.0 62.9 1.0

S.Imai, H.Suzuki, Y.Fujiyoshi, I.Shimada. Dynamically Regulated Two-Site Interaction of Viral Rna to Capture Host Translation Initiation Factor To Be Published.