Magnesium in PDB 8i7j: Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head

The structure of Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

The binding sites of Magnesium atom in the Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head (pdb code 8i7j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head, PDB code: 8i7j:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1801 b:48.6 occ:1.00 O3' 2:A511 1.8 61.1 1.0 O5' 2:U512 2.0 53.6 1.0 O4' 2:U512 2.1 53.6 1.0 O2' 2:A511 2.1 61.1 1.0 C4' 2:U512 2.3 53.6 1.0 P 2:U512 2.3 53.6 1.0 C2' 2:A511 2.3 61.1 1.0 C3' 2:A511 2.4 61.1 1.0 C5' 2:U512 2.4 53.6 1.0 OP1 2:U512 2.9 53.6 1.0 NE2 J:HIS133 3.3 57.4 1.0 C1' 2:U512 3.4 53.6 1.0 OP2 2:U512 3.6 53.6 1.0 O2 2:U512 3.6 53.6 1.0 C4' 2:A511 3.7 61.1 1.0 C3' 2:U512 3.8 53.6 1.0 C1' 2:A511 3.8 61.1 1.0 CD2 J:HIS133 3.9 57.4 1.0 C2' 2:U512 4.2 53.6 1.0 N1 2:U512 4.3 53.6 1.0 C2 2:U512 4.3 53.6 1.0 O4' 2:A511 4.4 61.1 1.0 O2' 2:U512 4.5 53.6 1.0 CE1 J:HIS133 4.5 57.4 1.0 O3' 2:U512 4.6 53.6 1.0 N9 2:A511 4.7 61.1 1.0 C5' 2:A511 4.8 61.1 1.0 N3 2:A511 5.0 61.1 1.0

Magnesium binding site 2 out of 2 in the Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yeast 40S-EIF4B - Partially Open Conformation of the 40S Head within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg1802 b:105.4 occ:1.00 OP2 2:C1209 2.4 156.8 1.0 P 2:C1209 3.2 156.8 1.0 O5' 2:C1209 3.4 156.8 1.0 OP1 2:C1209 3.7 156.8 1.0 OP2 2:A1210 4.2 150.4 1.0 C5' 2:C1445 4.4 160.6 1.0 C5' 2:C1209 4.6 156.8 1.0 O3' 2:C1208 4.7 142.9 1.0 C6 2:C1209 4.8 156.8 1.0 C4' 2:C1445 4.9 160.6 1.0 C5 2:C1209 5.0 156.8 1.0 C3' 2:C1209 5.0 156.8 1.0

A.Datey, T.Hussain. Yeast Eukaryotic Initiation Factor 4B Remodels the Mrna Entry Site on the Small Ribosomal Subunit To Be Published.