Magnesium in PDB 8ijl: Cyo-Em Structure of Wildtype Non-Gastric Proton Pump in the Presence of Na+, Alf and Adp

The structure of Cyo-Em Structure of Wildtype Non-Gastric Proton Pump in the Presence of Na+, Alf and Adp also contains other interesting chemical elements:

Sodium	(Na)	2 atoms
Fluorine	(F)	4 atoms
Aluminium	(Al)	1 atom

The binding sites of Magnesium atom in the Cyo-Em Structure of Wildtype Non-Gastric Proton Pump in the Presence of Na+, Alf and Adp (pdb code 8ijl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cyo-Em Structure of Wildtype Non-Gastric Proton Pump in the Presence of Na+, Alf and Adp, PDB code: 8ijl:

Magnesium binding site 1 out of 1 in the Cyo-Em Structure of Wildtype Non-Gastric Proton Pump in the Presence of Na+, Alf and Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cyo-Em Structure of Wildtype Non-Gastric Proton Pump in the Presence of Na+, Alf and Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1102 b:30.3 occ:1.00 F3 A:ALF1101 1.8 35.6 1.0 OD1 A:ASP729 2.0 33.2 1.0 O A:THR390 2.1 34.4 1.0 OD2 A:ASP388 2.3 21.1 1.0 CG A:ASP729 3.0 26.5 1.0 C A:THR390 3.3 23.4 1.0 CG A:ASP388 3.3 24.5 1.0 OD2 A:ASP729 3.4 36.3 1.0 AL A:ALF1101 3.5 37.1 1.0 F1 A:ALF1101 3.6 43.6 1.0 OD1 A:ASP388 3.7 35.7 1.0 OD2 A:ASP733 4.1 36.9 1.0 CA A:THR390 4.2 19.7 1.0 N A:GLY391 4.2 23.9 1.0 CB A:THR390 4.2 24.7 1.0 CB A:ASP729 4.3 21.8 1.0 F2 A:ALF1101 4.3 16.2 1.0 OG1 A:THR392 4.3 22.5 1.0 N A:ASP729 4.4 33.4 1.0 CA A:GLY391 4.4 21.1 1.0 N A:GLY730 4.4 26.1 1.0 O A:GLY232 4.4 27.3 1.0 N A:THR390 4.4 22.8 1.0 C A:ASP729 4.4 29.6 1.0 CA A:ASP729 4.6 25.9 1.0 CB A:ASP388 4.6 18.3 1.0 N A:THR392 4.6 24.7 1.0 CG2 A:THR390 4.7 24.3 1.0 CA A:GLY730 4.8 30.7 1.0 C A:GLY391 4.8 26.3 1.0 CA A:GLY232 4.9 20.9 1.0 O A:ASP729 4.9 38.5 1.0

K.Abe, T.Nishizawa, P.Artigas. An Unusual Conformation From Na + -Sensitive Non-Gastric Proton Pump Mutants Reveals Molecular Mechanisms of Cooperative Na + -Binding. Biochim Biophys Acta Mol V.1870 19543 2023CELL Res.
ISSN: ISSN 1879-2596
PubMed: 37482134
DOI: 10.1016/J.BBAMCR.2023.119543