Magnesium in PDB 8ijv: Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-02

The structure of Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-02 also contains other interesting chemical elements:

Chlorine	(Cl)	4 atoms
Fluorine	(F)	3 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-02 (pdb code 8ijv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-02, PDB code: 8ijv:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-02


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Gastric Proton Pump with Bound Dq-02 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1102 b:34.1 occ:1.00 O A:THR387 2.0 41.4 1.0 O A:HOH1204 2.0 31.8 1.0 F2 A:BFD385 2.1 44.8 1.0 OD1 A:ASP726 2.4 38.4 1.0 O A:HOH1212 2.5 30.1 1.0 OD2 A:BFD385 2.6 30.5 1.0 BE A:BFD385 3.1 23.0 1.0 C A:THR387 3.1 24.2 1.0 CG A:ASP726 3.3 24.4 1.0 CG A:BFD385 3.4 24.9 1.0 OD1 A:BFD385 3.4 38.1 1.0 OD2 A:ASP726 3.6 39.7 1.0 CB A:THR387 3.9 28.9 1.0 CA A:THR387 3.9 21.0 1.0 O A:SER225 4.0 48.7 1.0 N A:THR387 4.1 22.8 1.0 N A:GLY388 4.2 23.6 1.0 N A:GLY727 4.2 27.6 1.0 OD2 A:ASP730 4.2 44.5 1.0 F1 A:BFD385 4.4 39.3 1.0 F3 A:BFD385 4.4 35.1 1.0 CA A:GLY388 4.4 24.1 1.0 OG1 A:THR389 4.5 27.2 1.0 CG2 A:THR387 4.5 23.7 1.0 OD1 A:ASN729 4.5 43.0 1.0 CA A:GLY727 4.7 30.3 1.0 CB A:ASP726 4.7 27.6 1.0 CB A:BFD385 4.8 20.3 1.0 N A:ASP726 4.8 25.9 1.0 N A:THR389 4.8 26.6 1.0 C A:GLY388 4.9 16.4 1.0 C A:LYS386 4.9 24.2 1.0

K.Abe, S.Yokoshima, A.Yoshimori. Deep Learning Driven De Novo Drug Design Based on Gastric Proton Pump Structures To Be Published.