Magnesium in PDB 8imx: Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein

The structure of Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein (pdb code 8imx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein, PDB code: 8imx:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Gpi-T with A Chimeric Gpi-Anchored Protein within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg901 b:72.2 occ:1.00 O89 P:05E104 2.3 85.9 1.0 OE1 G:GLN355 2.4 75.7 1.0 NE2 G:HIS354 2.8 69.2 1.0 CD G:GLN355 3.6 75.7 1.0 CD2 G:HIS354 3.7 69.2 1.0 P83 P:05E104 3.7 85.9 1.0 CE1 G:HIS354 3.8 69.2 1.0 O82 P:05E104 4.1 85.9 1.0 NE2 G:GLN355 4.3 75.7 1.0 OE2 G:GLU351 4.5 65.8 1.0 O84 P:05E104 4.5 85.9 1.0 C85 P:05E104 4.6 85.9 1.0 CG G:GLN355 4.6 75.7 1.0 O97 P:05E104 4.7 85.9 1.0 O88 P:05E104 4.7 85.9 1.0 CG G:HIS354 4.9 69.2 1.0 ND1 G:HIS354 4.9 69.2 1.0

Y.Xu, T.Li, J.Hong, Q.Qu, D.Li. Structures of Substrates- and Products-Bound Glycosylphosphatidylinositol Transamidase Illuminate Gpi-Ap Biogenesis To Be Published.