Magnesium in PDB 8imy: Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate

The structure of Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate (pdb code 8imy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate, PDB code: 8imy:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Gpi-T (Inactive Mutant) with Gpi and PROULBP2, A Proprotein Substrate within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg1813 b:42.5 occ:1.00 NE2 G:HIS354 2.0 44.5 1.0 OE1 G:GLN355 2.1 48.9 1.0 O89 G:05E1814 2.2 54.6 1.0 CD2 G:HIS354 2.8 44.5 1.0 CE1 G:HIS354 3.1 44.5 1.0 CD G:GLN355 3.2 48.9 1.0 P83 G:05E1814 3.6 54.6 1.0 CG G:GLN355 3.9 48.9 1.0 CG G:HIS354 4.0 44.5 1.0 ND1 G:HIS354 4.1 44.5 1.0 O84 G:05E1814 4.1 54.6 1.0 O82 G:05E1814 4.2 54.6 1.0 NE2 G:GLN355 4.3 48.9 1.0 OE2 G:GLU351 4.3 46.1 1.0 OD2 K:ASP174 4.6 53.2 1.0 O88 G:05E1814 4.6 54.6 1.0 OE1 G:GLU351 4.6 46.1 1.0 CD G:GLU351 4.7 46.1 1.0 C85 G:05E1814 4.9 54.6 1.0

Y.Xu, T.Li, J.Hong, Q.Qu, D.Li. Structures of Substrates- and Products-Bound Glycosylphosphatidylinositol Transamidase Illuminate Gpi-Ap Biogenesis To Be Published.