Magnesium in PDB 8is7: Crtmlike with Two Fspp Molecules.
Protein crystallography data
The structure of Crtmlike with Two Fspp Molecules., PDB code: 8is7
was solved by
J.Y.Park,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
32.23 /
1.60
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
50.338,
64.469,
171.061,
90,
90,
90
|
R / Rfree (%)
|
17.6 /
20.6
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crtmlike with Two Fspp Molecules.
(pdb code 8is7). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the
Crtmlike with Two Fspp Molecules., PDB code: 8is7:
Jump to Magnesium binding site number:
1;
2;
3;
Magnesium binding site 1 out
of 3 in 8is7
Go back to
Magnesium Binding Sites List in 8is7
Magnesium binding site 1 out
of 3 in the Crtmlike with Two Fspp Molecules.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crtmlike with Two Fspp Molecules. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg303
b:16.3
occ:1.00
|
O
|
A:HOH509
|
1.9
|
17.2
|
1.0
|
OD1
|
A:ASP48
|
2.0
|
15.7
|
1.0
|
O
|
A:HOH401
|
2.1
|
18.9
|
1.0
|
O
|
A:HOH648
|
2.1
|
21.1
|
1.0
|
OD2
|
A:ASP52
|
2.2
|
19.8
|
1.0
|
O3A
|
A:FPS301
|
2.3
|
26.0
|
1.0
|
O2A
|
A:FPS301
|
2.9
|
30.4
|
1.0
|
CG
|
A:ASP52
|
3.0
|
18.7
|
1.0
|
CG
|
A:ASP48
|
3.1
|
17.5
|
1.0
|
PA
|
A:FPS301
|
3.1
|
30.1
|
1.0
|
OD1
|
A:ASP52
|
3.2
|
22.3
|
1.0
|
MG
|
A:MG304
|
3.2
|
20.6
|
1.0
|
OD2
|
A:ASP48
|
3.5
|
18.1
|
1.0
|
C2
|
A:FPS301
|
3.9
|
24.8
|
1.0
|
S1
|
A:FPS301
|
3.9
|
25.8
|
1.0
|
OD2
|
A:ASP110
|
3.9
|
18.4
|
1.0
|
OE1
|
A:GLN107
|
4.1
|
18.6
|
1.0
|
O
|
A:HOH428
|
4.2
|
23.6
|
1.0
|
NE2
|
A:GLN107
|
4.2
|
14.4
|
1.0
|
OH
|
A:TYR125
|
4.3
|
20.4
|
1.0
|
NH1
|
A:ARG177
|
4.3
|
21.3
|
1.0
|
CB
|
A:ASP48
|
4.4
|
16.0
|
1.0
|
CB
|
A:ASP52
|
4.4
|
19.9
|
1.0
|
C1
|
A:FPS301
|
4.5
|
24.7
|
1.0
|
O
|
A:HOH684
|
4.5
|
27.3
|
1.0
|
O
|
A:HOH408
|
4.5
|
26.4
|
1.0
|
O
|
A:HOH419
|
4.5
|
33.1
|
1.0
|
O1A
|
A:FPS301
|
4.5
|
21.9
|
1.0
|
CD
|
A:GLN107
|
4.6
|
16.1
|
1.0
|
O
|
A:ASP48
|
4.7
|
16.6
|
1.0
|
CA
|
A:ASP48
|
4.8
|
14.1
|
1.0
|
CG
|
A:ASP110
|
4.9
|
18.2
|
1.0
|
O
|
A:HOH593
|
4.9
|
23.9
|
1.0
|
|
Magnesium binding site 2 out
of 3 in 8is7
Go back to
Magnesium Binding Sites List in 8is7
Magnesium binding site 2 out
of 3 in the Crtmlike with Two Fspp Molecules.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crtmlike with Two Fspp Molecules. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg304
b:20.6
occ:1.00
|
O
|
A:HOH419
|
2.0
|
33.1
|
1.0
|
O3A
|
A:FPS301
|
2.0
|
26.0
|
1.0
|
O
|
A:HOH593
|
2.0
|
23.9
|
1.0
|
OD2
|
A:ASP52
|
2.0
|
19.8
|
1.0
|
OD2
|
A:ASP48
|
2.1
|
18.1
|
1.0
|
O
|
A:HOH684
|
2.2
|
27.3
|
1.0
|
CG
|
A:ASP48
|
3.0
|
17.5
|
1.0
|
CG
|
A:ASP52
|
3.1
|
18.7
|
1.0
|
MG
|
A:MG303
|
3.2
|
16.3
|
1.0
|
OD1
|
A:ASP48
|
3.2
|
15.7
|
1.0
|
PA
|
A:FPS301
|
3.3
|
30.1
|
1.0
|
CB
|
A:ASP52
|
3.6
|
19.9
|
1.0
|
O1A
|
A:FPS301
|
3.8
|
21.9
|
1.0
|
O2A
|
A:FPS301
|
3.9
|
30.4
|
1.0
|
O2A
|
A:FPS302
|
4.1
|
42.9
|
1.0
|
NH2
|
A:ARG45
|
4.2
|
22.2
|
1.0
|
O
|
A:HOH696
|
4.2
|
35.2
|
1.0
|
OD1
|
A:ASP52
|
4.2
|
22.3
|
1.0
|
O
|
A:HOH721
|
4.2
|
33.2
|
1.0
|
O
|
A:HOH425
|
4.2
|
35.9
|
1.0
|
O
|
A:HOH401
|
4.3
|
18.9
|
1.0
|
CB
|
A:ASP48
|
4.3
|
16.0
|
1.0
|
O
|
A:HOH756
|
4.4
|
38.6
|
1.0
|
O
|
A:ASP48
|
4.5
|
16.6
|
1.0
|
C2
|
A:FPS301
|
4.5
|
24.8
|
1.0
|
O
|
A:HOH408
|
4.6
|
26.4
|
1.0
|
O
|
A:HOH509
|
4.7
|
17.2
|
1.0
|
O
|
A:HOH648
|
4.8
|
21.1
|
1.0
|
C
|
A:ASP48
|
4.8
|
15.9
|
1.0
|
S1
|
A:FPS301
|
4.9
|
25.8
|
1.0
|
O1A
|
A:FPS302
|
4.9
|
31.2
|
1.0
|
C1
|
A:FPS301
|
4.9
|
24.7
|
1.0
|
O
|
A:HOH441
|
4.9
|
19.2
|
1.0
|
|
Magnesium binding site 3 out
of 3 in 8is7
Go back to
Magnesium Binding Sites List in 8is7
Magnesium binding site 3 out
of 3 in the Crtmlike with Two Fspp Molecules.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crtmlike with Two Fspp Molecules. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg305
b:13.4
occ:1.00
|
OD1
|
A:ASN164
|
2.1
|
15.3
|
1.0
|
O
|
A:HOH441
|
2.1
|
19.2
|
1.0
|
O1A
|
A:FPS301
|
2.1
|
21.9
|
1.0
|
O
|
A:HOH522
|
2.1
|
17.2
|
1.0
|
OD2
|
A:ASP168
|
2.1
|
16.4
|
1.0
|
O
|
A:HOH527
|
2.1
|
15.6
|
1.0
|
CG
|
A:ASN164
|
3.2
|
14.5
|
1.0
|
CG
|
A:ASP168
|
3.2
|
14.4
|
1.0
|
PA
|
A:FPS301
|
3.6
|
30.1
|
1.0
|
CB
|
A:ASP168
|
3.6
|
14.8
|
1.0
|
ND2
|
A:ASN164
|
3.7
|
15.7
|
1.0
|
O
|
A:HOH408
|
4.0
|
26.4
|
1.0
|
O1A
|
A:FPS302
|
4.1
|
31.2
|
1.0
|
O2A
|
A:FPS301
|
4.1
|
30.4
|
1.0
|
NH2
|
A:ARG167
|
4.3
|
17.9
|
1.0
|
OD1
|
A:ASP168
|
4.3
|
15.5
|
1.0
|
O
|
A:ASN164
|
4.3
|
10.8
|
1.0
|
O
|
A:HOH684
|
4.3
|
27.3
|
1.0
|
OD1
|
A:ASP172
|
4.3
|
16.9
|
1.0
|
O
|
A:HOH472
|
4.3
|
30.9
|
1.0
|
OD2
|
A:ASP172
|
4.4
|
15.0
|
1.0
|
S1
|
A:FPS301
|
4.4
|
25.8
|
1.0
|
O
|
A:HOH402
|
4.4
|
42.2
|
1.0
|
CB
|
A:ASN164
|
4.4
|
10.9
|
1.0
|
O
|
A:HOH657
|
4.5
|
18.6
|
1.0
|
O
|
A:HOH721
|
4.5
|
33.2
|
1.0
|
O
|
A:HOH419
|
4.5
|
33.1
|
1.0
|
C
|
A:ASN164
|
4.6
|
13.2
|
1.0
|
OE1
|
A:GLU171
|
4.6
|
28.7
|
1.0
|
O3A
|
A:FPS301
|
4.7
|
26.0
|
1.0
|
CG
|
A:ASP172
|
4.8
|
14.7
|
1.0
|
CA
|
A:ASN164
|
5.0
|
9.1
|
1.0
|
|
Reference:
J.Y.Park,
J.Y.Park.
N/A N/A.
Page generated: Fri Oct 4 10:25:57 2024
|