Magnesium in PDB 8is7: Crtmlike with Two Fspp Molecules.

Protein crystallography data

The structure of Crtmlike with Two Fspp Molecules., PDB code: 8is7 was solved by J.Y.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.23 / 1.60
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 50.338, 64.469, 171.061, 90, 90, 90
R / Rfree (%) 17.6 / 20.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crtmlike with Two Fspp Molecules. (pdb code 8is7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crtmlike with Two Fspp Molecules., PDB code: 8is7:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8is7

Go back to Magnesium Binding Sites List in 8is7
Magnesium binding site 1 out of 3 in the Crtmlike with Two Fspp Molecules.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crtmlike with Two Fspp Molecules. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:16.3
occ:1.00
O A:HOH509 1.9 17.2 1.0
OD1 A:ASP48 2.0 15.7 1.0
O A:HOH401 2.1 18.9 1.0
O A:HOH648 2.1 21.1 1.0
OD2 A:ASP52 2.2 19.8 1.0
O3A A:FPS301 2.3 26.0 1.0
O2A A:FPS301 2.9 30.4 1.0
CG A:ASP52 3.0 18.7 1.0
CG A:ASP48 3.1 17.5 1.0
PA A:FPS301 3.1 30.1 1.0
OD1 A:ASP52 3.2 22.3 1.0
MG A:MG304 3.2 20.6 1.0
OD2 A:ASP48 3.5 18.1 1.0
C2 A:FPS301 3.9 24.8 1.0
S1 A:FPS301 3.9 25.8 1.0
OD2 A:ASP110 3.9 18.4 1.0
OE1 A:GLN107 4.1 18.6 1.0
O A:HOH428 4.2 23.6 1.0
NE2 A:GLN107 4.2 14.4 1.0
OH A:TYR125 4.3 20.4 1.0
NH1 A:ARG177 4.3 21.3 1.0
CB A:ASP48 4.4 16.0 1.0
CB A:ASP52 4.4 19.9 1.0
C1 A:FPS301 4.5 24.7 1.0
O A:HOH684 4.5 27.3 1.0
O A:HOH408 4.5 26.4 1.0
O A:HOH419 4.5 33.1 1.0
O1A A:FPS301 4.5 21.9 1.0
CD A:GLN107 4.6 16.1 1.0
O A:ASP48 4.7 16.6 1.0
CA A:ASP48 4.8 14.1 1.0
CG A:ASP110 4.9 18.2 1.0
O A:HOH593 4.9 23.9 1.0

Magnesium binding site 2 out of 3 in 8is7

Go back to Magnesium Binding Sites List in 8is7
Magnesium binding site 2 out of 3 in the Crtmlike with Two Fspp Molecules.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crtmlike with Two Fspp Molecules. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg304

b:20.6
occ:1.00
O A:HOH419 2.0 33.1 1.0
O3A A:FPS301 2.0 26.0 1.0
O A:HOH593 2.0 23.9 1.0
OD2 A:ASP52 2.0 19.8 1.0
OD2 A:ASP48 2.1 18.1 1.0
O A:HOH684 2.2 27.3 1.0
CG A:ASP48 3.0 17.5 1.0
CG A:ASP52 3.1 18.7 1.0
MG A:MG303 3.2 16.3 1.0
OD1 A:ASP48 3.2 15.7 1.0
PA A:FPS301 3.3 30.1 1.0
CB A:ASP52 3.6 19.9 1.0
O1A A:FPS301 3.8 21.9 1.0
O2A A:FPS301 3.9 30.4 1.0
O2A A:FPS302 4.1 42.9 1.0
NH2 A:ARG45 4.2 22.2 1.0
O A:HOH696 4.2 35.2 1.0
OD1 A:ASP52 4.2 22.3 1.0
O A:HOH721 4.2 33.2 1.0
O A:HOH425 4.2 35.9 1.0
O A:HOH401 4.3 18.9 1.0
CB A:ASP48 4.3 16.0 1.0
O A:HOH756 4.4 38.6 1.0
O A:ASP48 4.5 16.6 1.0
C2 A:FPS301 4.5 24.8 1.0
O A:HOH408 4.6 26.4 1.0
O A:HOH509 4.7 17.2 1.0
O A:HOH648 4.8 21.1 1.0
C A:ASP48 4.8 15.9 1.0
S1 A:FPS301 4.9 25.8 1.0
O1A A:FPS302 4.9 31.2 1.0
C1 A:FPS301 4.9 24.7 1.0
O A:HOH441 4.9 19.2 1.0

Magnesium binding site 3 out of 3 in 8is7

Go back to Magnesium Binding Sites List in 8is7
Magnesium binding site 3 out of 3 in the Crtmlike with Two Fspp Molecules.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crtmlike with Two Fspp Molecules. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg305

b:13.4
occ:1.00
OD1 A:ASN164 2.1 15.3 1.0
O A:HOH441 2.1 19.2 1.0
O1A A:FPS301 2.1 21.9 1.0
O A:HOH522 2.1 17.2 1.0
OD2 A:ASP168 2.1 16.4 1.0
O A:HOH527 2.1 15.6 1.0
CG A:ASN164 3.2 14.5 1.0
CG A:ASP168 3.2 14.4 1.0
PA A:FPS301 3.6 30.1 1.0
CB A:ASP168 3.6 14.8 1.0
ND2 A:ASN164 3.7 15.7 1.0
O A:HOH408 4.0 26.4 1.0
O1A A:FPS302 4.1 31.2 1.0
O2A A:FPS301 4.1 30.4 1.0
NH2 A:ARG167 4.3 17.9 1.0
OD1 A:ASP168 4.3 15.5 1.0
O A:ASN164 4.3 10.8 1.0
O A:HOH684 4.3 27.3 1.0
OD1 A:ASP172 4.3 16.9 1.0
O A:HOH472 4.3 30.9 1.0
OD2 A:ASP172 4.4 15.0 1.0
S1 A:FPS301 4.4 25.8 1.0
O A:HOH402 4.4 42.2 1.0
CB A:ASN164 4.4 10.9 1.0
O A:HOH657 4.5 18.6 1.0
O A:HOH721 4.5 33.2 1.0
O A:HOH419 4.5 33.1 1.0
C A:ASN164 4.6 13.2 1.0
OE1 A:GLU171 4.6 28.7 1.0
O3A A:FPS301 4.7 26.0 1.0
CG A:ASP172 4.8 14.7 1.0
CA A:ASN164 5.0 9.1 1.0

Reference:

J.Y.Park, J.Y.Park. N/A N/A.
Page generated: Fri Oct 4 10:25:57 2024

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