Magnesium in PDB 8j3r: Cryo-Em Structure of the ASCAS12F-Hkra-SGRNAS3-5V7-Target Dna

The structure of Cryo-Em Structure of the ASCAS12F-Hkra-SGRNAS3-5V7-Target Dna also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of the ASCAS12F-Hkra-SGRNAS3-5V7-Target Dna (pdb code 8j3r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the ASCAS12F-Hkra-SGRNAS3-5V7-Target Dna, PDB code: 8j3r:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the ASCAS12F-Hkra-SGRNAS3-5V7-Target Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the ASCAS12F-Hkra-SGRNAS3-5V7-Target Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:51.3 occ:1.00 OG A:SER334 2.1 76.4 1.0 O A:LEU226 3.3 68.2 1.0 CB A:SER334 3.4 76.2 1.0 CA A:SER334 4.3 76.8 1.0 C A:LEU226 4.4 58.7 1.0 CB A:LEU226 4.5 60.5 1.0 N A:SER334 4.5 83.4 1.0 OE1 A:GLU324 4.8 81.8 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the ASCAS12F-Hkra-SGRNAS3-5V7-Target Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the ASCAS12F-Hkra-SGRNAS3-5V7-Target Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg101 b:26.2 occ:1.00 O4 C:U-5 4.2 57.7 1.0 O6 C:G-4 4.5 67.5 1.0 O4 C:U-87 4.5 62.2 1.0 C4 C:U-5 4.6 55.8 1.0 N6 C:A-3 4.8 59.2 1.0 C5 C:U-5 4.8 54.0 1.0 N7 C:G-4 5.0 53.9 1.0 O6 C:G-88 5.0 61.6 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the ASCAS12F-Hkra-SGRNAS3-5V7-Target Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the ASCAS12F-Hkra-SGRNAS3-5V7-Target Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg102 b:41.0 occ:1.00 O6 C:G-83 4.4 67.6 1.0 O6 C:G-89 4.4 57.7 1.0 N7 C:A-84 4.4 60.2 1.0 N6 C:A-84 4.5 64.6 1.0 N7 C:G-83 4.6 64.5 1.0

T.Hino, N.S.Omura, R.Nakagawa, T.Togashi, N.S.Takeda, T.Hiramoto, S.Tasaka, H.Hirano, T.Tokuyama, H.Uosaki, H.Ishiguro, H.Yamano, Y.Ozaki, D.Motooka, H.Mori, Y.Kirita, Y.Kise, Y.Itoh, S.Matoba, H.Aburatani, N.Yachie, V.Siksnys, T.Ohmori, A.Hoshino, O.Nureki. Minimal and Most Efficient Genome Editing Cas Enzyme To Be Published.