Magnesium in PDB 8j3x: Crystal Structure of CBM6E From Saccharophagus Degradans

The structure of Crystal Structure of CBM6E From Saccharophagus Degradans, PDB code: 8j3x was solved by C.He, F.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.68 / 2.40
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	84.807, 146.033, 76.847, 90, 90, 90
R / Rfree (%)	18.2 / 23.3

The binding sites of Magnesium atom in the Crystal Structure of CBM6E From Saccharophagus Degradans (pdb code 8j3x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of CBM6E From Saccharophagus Degradans, PDB code: 8j3x:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of CBM6E From Saccharophagus Degradans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of CBM6E From Saccharophagus Degradans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:34.9 occ:1.00 O A:ALA379 2.3 41.3 1.0 OE1 A:GLU357 2.4 45.8 1.0 O A:ASN467 2.5 41.4 1.0 OE2 A:GLU359 2.6 39.0 1.0 O A:GLY377 2.6 42.5 1.0 OD1 A:ASN467 2.6 45.4 1.0 OE1 A:GLU359 2.7 40.3 1.0 CD A:GLU359 3.0 40.4 1.0 C A:GLY377 3.4 45.2 1.0 C A:ALA379 3.5 40.2 1.0 C A:ASN467 3.6 45.3 1.0 CA A:GLY377 3.6 46.7 1.0 CD A:GLU357 3.6 47.4 1.0 N A:ALA379 3.8 39.2 1.0 CG A:ASN467 3.8 46.1 1.0 CA A:ASN467 4.1 44.9 1.0 CA A:ALA379 4.1 41.6 1.0 CB A:GLU357 4.2 39.2 1.0 CG A:GLU357 4.3 37.9 1.0 N A:ALA358 4.4 40.1 1.0 N A:LEU378 4.5 42.8 1.0 CG A:GLU359 4.5 36.2 1.0 CB A:ASN467 4.6 46.9 1.0 N A:LYS380 4.6 37.7 1.0 OE2 A:GLU357 4.6 50.2 1.0 CA A:GLU357 4.6 40.6 1.0 CB A:ALA379 4.6 38.6 1.0 N A:TRP468 4.6 46.7 1.0 ND2 A:ASN467 4.8 49.8 1.0 OG A:SER338 4.8 35.8 1.0 CB A:TRP468 4.8 46.8 1.0 CA A:LYS380 4.8 40.6 1.0 C A:LEU378 4.9 41.5 1.0 CD1 A:TRP468 4.9 51.0 1.0 C A:GLU357 4.9 39.9 1.0 N A:GLU359 5.0 39.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of CBM6E From Saccharophagus Degradans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of CBM6E From Saccharophagus Degradans within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:35.6 occ:1.00 OE1 B:GLU357 2.4 38.3 1.0 O B:ALA379 2.4 36.0 1.0 OE1 B:GLU359 2.4 36.4 1.0 O B:ASN467 2.4 36.1 1.0 OD1 B:ASN467 2.5 38.4 1.0 OE2 B:GLU359 2.7 39.8 1.0 CD B:GLU359 2.9 35.6 1.0 O B:GLY377 3.1 54.9 1.0 C B:ASN467 3.5 37.4 1.0 C B:ALA379 3.5 38.5 1.0 CD B:GLU357 3.6 40.7 1.0 CG B:ASN467 3.7 40.3 1.0 N B:ALA379 3.9 41.8 1.0 CA B:ASN467 3.9 37.2 1.0 C B:GLY377 4.0 53.8 1.0 CB B:GLU357 4.2 36.2 1.0 CA B:ALA379 4.2 39.6 1.0 CA B:GLY377 4.3 51.3 1.0 N B:ALA358 4.3 34.8 1.0 CG B:GLU357 4.4 34.6 1.0 CB B:ASN467 4.4 36.5 1.0 CG B:GLU359 4.5 32.9 1.0 OE2 B:GLU357 4.5 44.9 1.0 CA B:GLU357 4.6 33.8 1.0 N B:TRP468 4.6 35.9 1.0 N B:LYS380 4.6 36.9 1.0 CB B:ALA379 4.6 36.6 1.0 ND2 B:ASN467 4.8 41.1 1.0 CA B:LYS380 4.8 34.7 1.0 C B:GLU357 4.9 35.6 1.0 CB B:TRP468 4.9 36.2 1.0 OG B:SER338 4.9 36.5 1.0 N B:GLU359 4.9 32.4 1.0 CD1 B:TRP468 4.9 39.2 1.0

C.He, F.Li. Structural Insights Into CBM6E From Saccharophagus Degradans To Be Published.