Magnesium in PDB 8j5k: Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
Other elements in 8j5k:
The structure of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
206;
Binding sites:
The binding sites of Magnesium atom in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
(pdb code 8j5k). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 206 binding sites of Magnesium where determined in the
Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana, PDB code: 8j5k:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 206 in 8j5k
Go back to
Magnesium Binding Sites List in 8j5k
Magnesium binding site 1 out
of 206 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:65.0
occ:1.00
|
MG
|
A:CLA403
|
0.0
|
65.0
|
1.0
|
NB
|
A:CLA403
|
2.0
|
65.0
|
1.0
|
ND
|
A:CLA403
|
2.0
|
65.0
|
1.0
|
NC
|
A:CLA403
|
2.1
|
65.0
|
1.0
|
NA
|
A:CLA403
|
2.1
|
65.0
|
1.0
|
NE2
|
A:HIS198
|
2.7
|
63.9
|
1.0
|
C4D
|
A:CLA403
|
2.9
|
65.0
|
1.0
|
C1B
|
A:CLA403
|
3.0
|
65.0
|
1.0
|
C4A
|
A:CLA403
|
3.0
|
65.0
|
1.0
|
C4B
|
A:CLA403
|
3.1
|
65.0
|
1.0
|
C1C
|
A:CLA403
|
3.1
|
65.0
|
1.0
|
C4C
|
A:CLA403
|
3.1
|
65.0
|
1.0
|
C1A
|
A:CLA403
|
3.1
|
65.0
|
1.0
|
C1D
|
A:CLA403
|
3.2
|
65.0
|
1.0
|
CE1
|
A:HIS198
|
3.4
|
63.9
|
1.0
|
CHB
|
A:CLA403
|
3.4
|
65.0
|
1.0
|
CHC
|
A:CLA403
|
3.4
|
65.0
|
1.0
|
CHA
|
A:CLA403
|
3.5
|
65.0
|
1.0
|
CHD
|
A:CLA403
|
3.5
|
65.0
|
1.0
|
CAB
|
D:CLA403
|
3.8
|
64.7
|
1.0
|
CD2
|
A:HIS198
|
3.8
|
63.9
|
1.0
|
CE
|
A:MET183
|
3.9
|
64.2
|
1.0
|
C3D
|
A:CLA403
|
4.2
|
65.0
|
1.0
|
C2B
|
A:CLA403
|
4.3
|
65.0
|
1.0
|
C3B
|
A:CLA403
|
4.3
|
65.0
|
1.0
|
C2C
|
A:CLA403
|
4.3
|
65.0
|
1.0
|
C2D
|
A:CLA403
|
4.4
|
65.0
|
1.0
|
C3C
|
A:CLA403
|
4.4
|
65.0
|
1.0
|
C3A
|
A:CLA403
|
4.4
|
65.0
|
1.0
|
C2A
|
A:CLA403
|
4.4
|
65.0
|
1.0
|
ND1
|
A:HIS198
|
4.6
|
63.9
|
1.0
|
C3B
|
D:CLA403
|
4.7
|
64.7
|
1.0
|
CG
|
A:HIS198
|
4.9
|
63.9
|
1.0
|
CBD
|
A:CLA403
|
4.9
|
65.0
|
1.0
|
CHC
|
D:CLA403
|
4.9
|
64.7
|
1.0
|
|
Magnesium binding site 2 out
of 206 in 8j5k
Go back to
Magnesium Binding Sites List in 8j5k
Magnesium binding site 2 out
of 206 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:64.9
occ:1.00
|
MG
|
A:CLA404
|
0.0
|
64.9
|
1.0
|
NB
|
A:CLA404
|
2.0
|
64.9
|
1.0
|
ND
|
A:CLA404
|
2.0
|
64.9
|
1.0
|
NA
|
A:CLA404
|
2.1
|
64.9
|
1.0
|
NC
|
A:CLA404
|
2.1
|
64.9
|
1.0
|
C4D
|
A:CLA404
|
2.9
|
64.9
|
1.0
|
C1B
|
A:CLA404
|
3.0
|
64.9
|
1.0
|
C4A
|
A:CLA404
|
3.0
|
64.9
|
1.0
|
C4B
|
A:CLA404
|
3.1
|
64.9
|
1.0
|
C1C
|
A:CLA404
|
3.1
|
64.9
|
1.0
|
C4C
|
A:CLA404
|
3.1
|
64.9
|
1.0
|
C1A
|
A:CLA404
|
3.1
|
64.9
|
1.0
|
C1D
|
A:CLA404
|
3.1
|
64.9
|
1.0
|
CHB
|
A:CLA404
|
3.4
|
64.9
|
1.0
|
CHC
|
A:CLA404
|
3.4
|
64.9
|
1.0
|
CHA
|
A:CLA404
|
3.5
|
64.9
|
1.0
|
CHD
|
A:CLA404
|
3.5
|
64.9
|
1.0
|
CBB
|
A:PHO406
|
4.0
|
66.7
|
1.0
|
C3D
|
A:CLA404
|
4.2
|
64.9
|
1.0
|
C2B
|
A:CLA404
|
4.3
|
64.9
|
1.0
|
C3B
|
A:CLA404
|
4.3
|
64.9
|
1.0
|
C2C
|
A:CLA404
|
4.3
|
64.9
|
1.0
|
C2D
|
A:CLA404
|
4.4
|
64.9
|
1.0
|
C3C
|
A:CLA404
|
4.4
|
64.9
|
1.0
|
C3A
|
A:CLA404
|
4.4
|
64.9
|
1.0
|
C2A
|
A:CLA404
|
4.4
|
64.9
|
1.0
|
CBA
|
A:CLA404
|
4.8
|
64.9
|
1.0
|
CBD
|
A:CLA404
|
4.9
|
64.9
|
1.0
|
|
Magnesium binding site 3 out
of 206 in 8j5k
Go back to
Magnesium Binding Sites List in 8j5k
Magnesium binding site 3 out
of 206 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg407
b:74.7
occ:1.00
|
MG
|
A:CLA407
|
0.0
|
74.7
|
1.0
|
NB
|
A:CLA407
|
2.0
|
74.7
|
1.0
|
ND
|
A:CLA407
|
2.0
|
74.7
|
1.0
|
NC
|
A:CLA407
|
2.1
|
74.7
|
1.0
|
NA
|
A:CLA407
|
2.1
|
74.7
|
1.0
|
C4D
|
A:CLA407
|
2.9
|
74.7
|
1.0
|
C1B
|
A:CLA407
|
3.0
|
74.7
|
1.0
|
CE1
|
A:HIS118
|
3.0
|
68.5
|
1.0
|
C4A
|
A:CLA407
|
3.0
|
74.7
|
1.0
|
C4B
|
A:CLA407
|
3.1
|
74.7
|
1.0
|
C1C
|
A:CLA407
|
3.1
|
74.7
|
1.0
|
C4C
|
A:CLA407
|
3.1
|
74.7
|
1.0
|
C1A
|
A:CLA407
|
3.1
|
74.7
|
1.0
|
C1D
|
A:CLA407
|
3.2
|
74.7
|
1.0
|
CHB
|
A:CLA407
|
3.4
|
74.7
|
1.0
|
CHC
|
A:CLA407
|
3.4
|
74.7
|
1.0
|
CHA
|
A:CLA407
|
3.5
|
74.7
|
1.0
|
NE2
|
A:HIS118
|
3.5
|
68.5
|
1.0
|
CHD
|
A:CLA407
|
3.5
|
74.7
|
1.0
|
CG2
|
I:VAL8
|
3.9
|
73.6
|
1.0
|
CG2
|
I:VAL12
|
4.0
|
72.7
|
1.0
|
ND1
|
A:HIS118
|
4.1
|
68.5
|
1.0
|
C3D
|
A:CLA407
|
4.3
|
74.7
|
1.0
|
C2B
|
A:CLA407
|
4.3
|
74.7
|
1.0
|
C3B
|
A:CLA407
|
4.3
|
74.7
|
1.0
|
C2C
|
A:CLA407
|
4.3
|
74.7
|
1.0
|
C2D
|
A:CLA407
|
4.4
|
74.7
|
1.0
|
C3C
|
A:CLA407
|
4.4
|
74.7
|
1.0
|
C3A
|
A:CLA407
|
4.4
|
74.7
|
1.0
|
C2A
|
A:CLA407
|
4.5
|
74.7
|
1.0
|
CD2
|
A:HIS118
|
4.8
|
68.5
|
1.0
|
CBA
|
A:CLA407
|
4.8
|
74.7
|
1.0
|
CBD
|
A:CLA407
|
4.9
|
74.7
|
1.0
|
|
Magnesium binding site 4 out
of 206 in 8j5k
Go back to
Magnesium Binding Sites List in 8j5k
Magnesium binding site 4 out
of 206 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg501
b:75.3
occ:1.00
|
MG
|
B:CLA501
|
0.0
|
75.3
|
1.0
|
NB
|
B:CLA501
|
2.0
|
75.3
|
1.0
|
ND
|
B:CLA501
|
2.0
|
75.3
|
1.0
|
NC
|
B:CLA501
|
2.1
|
75.3
|
1.0
|
NA
|
B:CLA501
|
2.1
|
75.3
|
1.0
|
C4D
|
B:CLA501
|
2.9
|
75.3
|
1.0
|
C1B
|
B:CLA501
|
3.0
|
75.3
|
1.0
|
C4A
|
B:CLA501
|
3.0
|
75.3
|
1.0
|
C4B
|
B:CLA501
|
3.1
|
75.3
|
1.0
|
C1C
|
B:CLA501
|
3.1
|
75.3
|
1.0
|
C4C
|
B:CLA501
|
3.1
|
75.3
|
1.0
|
C1D
|
B:CLA501
|
3.2
|
75.3
|
1.0
|
C1A
|
B:CLA501
|
3.2
|
75.3
|
1.0
|
CHB
|
B:CLA501
|
3.4
|
75.3
|
1.0
|
C33
|
0:LMG315
|
3.4
|
130.8
|
1.0
|
CHC
|
B:CLA501
|
3.4
|
75.3
|
1.0
|
CHA
|
B:CLA501
|
3.5
|
75.3
|
1.0
|
CHD
|
B:CLA501
|
3.5
|
75.3
|
1.0
|
C30
|
0:LMG315
|
4.2
|
130.8
|
1.0
|
C3D
|
B:CLA501
|
4.3
|
75.3
|
1.0
|
C2B
|
B:CLA501
|
4.3
|
75.3
|
1.0
|
C32
|
0:LMG315
|
4.3
|
130.8
|
1.0
|
C3B
|
B:CLA501
|
4.3
|
75.3
|
1.0
|
C2C
|
B:CLA501
|
4.3
|
75.3
|
1.0
|
C2D
|
B:CLA501
|
4.4
|
75.3
|
1.0
|
C3C
|
B:CLA501
|
4.4
|
75.3
|
1.0
|
C3A
|
B:CLA501
|
4.4
|
75.3
|
1.0
|
C31
|
0:LMG315
|
4.5
|
130.8
|
1.0
|
C2A
|
B:CLA501
|
4.5
|
75.3
|
1.0
|
C34
|
0:LMG315
|
4.6
|
130.8
|
1.0
|
CE2
|
B:PHE190
|
4.9
|
70.2
|
1.0
|
CBD
|
B:CLA501
|
4.9
|
75.3
|
1.0
|
CBB
|
B:CLA502
|
5.0
|
66.9
|
1.0
|
|
Magnesium binding site 5 out
of 206 in 8j5k
Go back to
Magnesium Binding Sites List in 8j5k
Magnesium binding site 5 out
of 206 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg502
b:66.9
occ:1.00
|
MG
|
B:CLA502
|
0.0
|
66.9
|
1.0
|
NB
|
B:CLA502
|
2.0
|
66.9
|
1.0
|
ND
|
B:CLA502
|
2.0
|
66.9
|
1.0
|
NC
|
B:CLA502
|
2.1
|
66.9
|
1.0
|
NA
|
B:CLA502
|
2.1
|
66.9
|
1.0
|
ND1
|
B:HIS201
|
2.8
|
65.1
|
1.0
|
C4D
|
B:CLA502
|
2.9
|
66.9
|
1.0
|
C1B
|
B:CLA502
|
3.0
|
66.9
|
1.0
|
C4A
|
B:CLA502
|
3.0
|
66.9
|
1.0
|
C4B
|
B:CLA502
|
3.0
|
66.9
|
1.0
|
C1C
|
B:CLA502
|
3.1
|
66.9
|
1.0
|
C4C
|
B:CLA502
|
3.1
|
66.9
|
1.0
|
C1A
|
B:CLA502
|
3.1
|
66.9
|
1.0
|
C1D
|
B:CLA502
|
3.2
|
66.9
|
1.0
|
CHB
|
B:CLA502
|
3.4
|
66.9
|
1.0
|
CHC
|
B:CLA502
|
3.4
|
66.9
|
1.0
|
CHA
|
B:CLA502
|
3.5
|
66.9
|
1.0
|
CHD
|
B:CLA502
|
3.5
|
66.9
|
1.0
|
CE1
|
B:HIS201
|
3.5
|
65.1
|
1.0
|
CZ
|
H:PHE53
|
3.7
|
65.9
|
1.0
|
CG
|
B:HIS201
|
3.8
|
65.1
|
1.0
|
CB
|
B:HIS201
|
4.1
|
65.1
|
1.0
|
CE2
|
H:PHE53
|
4.2
|
65.9
|
1.0
|
C3D
|
B:CLA502
|
4.3
|
66.9
|
1.0
|
C2B
|
B:CLA502
|
4.3
|
66.9
|
1.0
|
C3B
|
B:CLA502
|
4.3
|
66.9
|
1.0
|
C2C
|
B:CLA502
|
4.3
|
66.9
|
1.0
|
C2D
|
B:CLA502
|
4.4
|
66.9
|
1.0
|
C3C
|
B:CLA502
|
4.4
|
66.9
|
1.0
|
C3A
|
B:CLA502
|
4.4
|
66.9
|
1.0
|
C2A
|
B:CLA502
|
4.4
|
66.9
|
1.0
|
NE2
|
B:HIS201
|
4.7
|
65.1
|
1.0
|
CA
|
B:HIS201
|
4.7
|
65.1
|
1.0
|
CE1
|
B:PHE190
|
4.7
|
70.2
|
1.0
|
CE1
|
H:PHE53
|
4.8
|
65.9
|
1.0
|
CD2
|
B:HIS201
|
4.9
|
65.1
|
1.0
|
CBD
|
B:CLA502
|
4.9
|
66.9
|
1.0
|
|
Magnesium binding site 6 out
of 206 in 8j5k
Go back to
Magnesium Binding Sites List in 8j5k
Magnesium binding site 6 out
of 206 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg503
b:65.9
occ:1.00
|
MG
|
B:CLA503
|
0.0
|
65.9
|
1.0
|
NB
|
B:CLA503
|
2.0
|
65.9
|
1.0
|
ND
|
B:CLA503
|
2.0
|
65.9
|
1.0
|
NC
|
B:CLA503
|
2.1
|
65.9
|
1.0
|
NA
|
B:CLA503
|
2.1
|
65.9
|
1.0
|
NE2
|
B:HIS202
|
2.8
|
64.6
|
1.0
|
C4D
|
B:CLA503
|
2.9
|
65.9
|
1.0
|
C1B
|
B:CLA503
|
3.0
|
65.9
|
1.0
|
C4A
|
B:CLA503
|
3.0
|
65.9
|
1.0
|
C4B
|
B:CLA503
|
3.0
|
65.9
|
1.0
|
C1C
|
B:CLA503
|
3.1
|
65.9
|
1.0
|
C4C
|
B:CLA503
|
3.1
|
65.9
|
1.0
|
C1A
|
B:CLA503
|
3.1
|
65.9
|
1.0
|
C1D
|
B:CLA503
|
3.2
|
65.9
|
1.0
|
CHB
|
B:CLA503
|
3.4
|
65.9
|
1.0
|
CHC
|
B:CLA503
|
3.4
|
65.9
|
1.0
|
CHA
|
B:CLA503
|
3.5
|
65.9
|
1.0
|
CHD
|
B:CLA503
|
3.5
|
65.9
|
1.0
|
CE1
|
B:HIS202
|
3.7
|
64.6
|
1.0
|
CD2
|
B:HIS202
|
3.8
|
64.6
|
1.0
|
C6
|
B:CLA505
|
4.2
|
67.1
|
1.0
|
C3D
|
B:CLA503
|
4.3
|
65.9
|
1.0
|
C2B
|
B:CLA503
|
4.3
|
65.9
|
1.0
|
C3B
|
B:CLA503
|
4.3
|
65.9
|
1.0
|
C2C
|
B:CLA503
|
4.3
|
65.9
|
1.0
|
C2D
|
B:CLA503
|
4.4
|
65.9
|
1.0
|
C9
|
B:CLA505
|
4.4
|
67.1
|
1.0
|
C3C
|
B:CLA503
|
4.4
|
65.9
|
1.0
|
C7
|
B:CLA505
|
4.4
|
67.1
|
1.0
|
C3A
|
B:CLA503
|
4.4
|
65.9
|
1.0
|
C2A
|
B:CLA503
|
4.5
|
65.9
|
1.0
|
ND1
|
B:HIS202
|
4.8
|
64.6
|
1.0
|
CBA
|
B:CLA503
|
4.9
|
65.9
|
1.0
|
CG
|
B:HIS202
|
4.9
|
64.6
|
1.0
|
NE2
|
B:HIS201
|
4.9
|
65.1
|
1.0
|
CBD
|
B:CLA503
|
4.9
|
65.9
|
1.0
|
C8
|
B:CLA505
|
5.0
|
67.1
|
1.0
|
|
Magnesium binding site 7 out
of 206 in 8j5k
Go back to
Magnesium Binding Sites List in 8j5k
Magnesium binding site 7 out
of 206 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg504
b:67.8
occ:1.00
|
MG
|
B:CLA504
|
0.0
|
67.8
|
1.0
|
NB
|
B:CLA504
|
2.0
|
67.8
|
1.0
|
ND
|
B:CLA504
|
2.0
|
67.8
|
1.0
|
NC
|
B:CLA504
|
2.1
|
67.8
|
1.0
|
NA
|
B:CLA504
|
2.1
|
67.8
|
1.0
|
NE2
|
B:HIS455
|
2.8
|
66.3
|
1.0
|
C4D
|
B:CLA504
|
2.9
|
67.8
|
1.0
|
C1B
|
B:CLA504
|
3.0
|
67.8
|
1.0
|
C4A
|
B:CLA504
|
3.0
|
67.8
|
1.0
|
C4B
|
B:CLA504
|
3.1
|
67.8
|
1.0
|
C1C
|
B:CLA504
|
3.1
|
67.8
|
1.0
|
C4C
|
B:CLA504
|
3.1
|
67.8
|
1.0
|
C1D
|
B:CLA504
|
3.2
|
67.8
|
1.0
|
C1A
|
B:CLA504
|
3.2
|
67.8
|
1.0
|
CHB
|
B:CLA504
|
3.4
|
67.8
|
1.0
|
CHC
|
B:CLA504
|
3.4
|
67.8
|
1.0
|
CHA
|
B:CLA504
|
3.5
|
67.8
|
1.0
|
CHD
|
B:CLA504
|
3.5
|
67.8
|
1.0
|
CE1
|
B:HIS455
|
3.6
|
66.3
|
1.0
|
CD2
|
B:HIS455
|
3.7
|
66.3
|
1.0
|
C3D
|
B:CLA504
|
4.3
|
67.8
|
1.0
|
C2B
|
B:CLA504
|
4.3
|
67.8
|
1.0
|
C3B
|
B:CLA504
|
4.3
|
67.8
|
1.0
|
C2C
|
B:CLA504
|
4.3
|
67.8
|
1.0
|
C2D
|
B:CLA504
|
4.4
|
67.8
|
1.0
|
C3C
|
B:CLA504
|
4.4
|
67.8
|
1.0
|
C3A
|
B:CLA504
|
4.4
|
67.8
|
1.0
|
C2A
|
B:CLA504
|
4.5
|
67.8
|
1.0
|
ND1
|
B:HIS455
|
4.7
|
66.3
|
1.0
|
CG
|
B:HIS455
|
4.8
|
66.3
|
1.0
|
CBD
|
B:CLA504
|
4.9
|
67.8
|
1.0
|
CAB
|
B:CLA513
|
4.9
|
68.3
|
1.0
|
|
Magnesium binding site 8 out
of 206 in 8j5k
Go back to
Magnesium Binding Sites List in 8j5k
Magnesium binding site 8 out
of 206 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg505
b:67.1
occ:1.00
|
MG
|
B:CLA505
|
0.0
|
67.1
|
1.0
|
NB
|
B:CLA505
|
2.0
|
67.1
|
1.0
|
ND
|
B:CLA505
|
2.0
|
67.1
|
1.0
|
NC
|
B:CLA505
|
2.1
|
67.1
|
1.0
|
NA
|
B:CLA505
|
2.1
|
67.1
|
1.0
|
NE2
|
B:HIS100
|
2.7
|
71.3
|
1.0
|
C4D
|
B:CLA505
|
2.9
|
67.1
|
1.0
|
C1B
|
B:CLA505
|
3.0
|
67.1
|
1.0
|
C4A
|
B:CLA505
|
3.0
|
67.1
|
1.0
|
C4B
|
B:CLA505
|
3.1
|
67.1
|
1.0
|
C1C
|
B:CLA505
|
3.1
|
67.1
|
1.0
|
C4C
|
B:CLA505
|
3.1
|
67.1
|
1.0
|
C1A
|
B:CLA505
|
3.1
|
67.1
|
1.0
|
C1D
|
B:CLA505
|
3.2
|
67.1
|
1.0
|
CHB
|
B:CLA505
|
3.4
|
67.1
|
1.0
|
CHC
|
B:CLA505
|
3.4
|
67.1
|
1.0
|
CE1
|
B:HIS100
|
3.5
|
71.3
|
1.0
|
CHA
|
B:CLA505
|
3.5
|
67.1
|
1.0
|
CHD
|
B:CLA505
|
3.5
|
67.1
|
1.0
|
CD2
|
B:HIS100
|
3.8
|
71.3
|
1.0
|
C1
|
B:CLA504
|
3.9
|
67.8
|
1.0
|
C4
|
B:CLA504
|
4.1
|
67.8
|
1.0
|
C3D
|
B:CLA505
|
4.3
|
67.1
|
1.0
|
C2B
|
B:CLA505
|
4.3
|
67.1
|
1.0
|
C3B
|
B:CLA505
|
4.3
|
67.1
|
1.0
|
C2C
|
B:CLA505
|
4.3
|
67.1
|
1.0
|
C2D
|
B:CLA505
|
4.4
|
67.1
|
1.0
|
C3C
|
B:CLA505
|
4.4
|
67.1
|
1.0
|
C2
|
B:CLA504
|
4.4
|
67.8
|
1.0
|
C3A
|
B:CLA505
|
4.4
|
67.1
|
1.0
|
C3
|
B:CLA504
|
4.4
|
67.8
|
1.0
|
C2A
|
B:CLA505
|
4.5
|
67.1
|
1.0
|
ND1
|
B:HIS100
|
4.7
|
71.3
|
1.0
|
CG
|
B:HIS100
|
4.9
|
71.3
|
1.0
|
CBD
|
B:CLA505
|
4.9
|
67.1
|
1.0
|
CBA
|
B:CLA505
|
4.9
|
67.1
|
1.0
|
|
Magnesium binding site 9 out
of 206 in 8j5k
Go back to
Magnesium Binding Sites List in 8j5k
Magnesium binding site 9 out
of 206 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg506
b:73.0
occ:1.00
|
MG
|
B:CLA506
|
0.0
|
73.0
|
1.0
|
NB
|
B:CLA506
|
2.0
|
73.0
|
1.0
|
ND
|
B:CLA506
|
2.0
|
73.0
|
1.0
|
NC
|
B:CLA506
|
2.1
|
73.0
|
1.0
|
NA
|
B:CLA506
|
2.1
|
73.0
|
1.0
|
C4D
|
B:CLA506
|
2.9
|
73.0
|
1.0
|
C1B
|
B:CLA506
|
3.0
|
73.0
|
1.0
|
C4A
|
B:CLA506
|
3.0
|
73.0
|
1.0
|
C4B
|
B:CLA506
|
3.1
|
73.0
|
1.0
|
C1C
|
B:CLA506
|
3.1
|
73.0
|
1.0
|
ND1
|
B:HIS157
|
3.1
|
72.0
|
1.0
|
C4C
|
B:CLA506
|
3.1
|
73.0
|
1.0
|
C1A
|
B:CLA506
|
3.1
|
73.0
|
1.0
|
C1D
|
B:CLA506
|
3.2
|
73.0
|
1.0
|
CE1
|
B:HIS157
|
3.2
|
72.0
|
1.0
|
CHB
|
B:CLA506
|
3.4
|
73.0
|
1.0
|
CG
|
B:HIS157
|
3.4
|
72.0
|
1.0
|
CHC
|
B:CLA506
|
3.4
|
73.0
|
1.0
|
CHA
|
B:CLA506
|
3.5
|
73.0
|
1.0
|
C13
|
B:LMG520
|
3.5
|
79.9
|
1.0
|
CHD
|
B:CLA506
|
3.5
|
73.0
|
1.0
|
NE2
|
B:HIS157
|
3.6
|
72.0
|
1.0
|
CD2
|
B:HIS157
|
3.7
|
72.0
|
1.0
|
CB
|
B:HIS157
|
4.2
|
72.0
|
1.0
|
C3D
|
B:CLA506
|
4.2
|
73.0
|
1.0
|
C2B
|
B:CLA506
|
4.3
|
73.0
|
1.0
|
C3B
|
B:CLA506
|
4.3
|
73.0
|
1.0
|
C2C
|
B:CLA506
|
4.3
|
73.0
|
1.0
|
C14
|
B:LMG520
|
4.3
|
79.9
|
1.0
|
C2D
|
B:CLA506
|
4.4
|
73.0
|
1.0
|
C3C
|
B:CLA506
|
4.4
|
73.0
|
1.0
|
C3A
|
B:CLA506
|
4.4
|
73.0
|
1.0
|
C2A
|
B:CLA506
|
4.4
|
73.0
|
1.0
|
C12
|
B:LMG520
|
4.5
|
79.9
|
1.0
|
C11
|
B:LMG520
|
4.5
|
79.9
|
1.0
|
CBD
|
B:CLA506
|
4.9
|
73.0
|
1.0
|
CBA
|
B:CLA506
|
4.9
|
73.0
|
1.0
|
|
Magnesium binding site 10 out
of 206 in 8j5k
Go back to
Magnesium Binding Sites List in 8j5k
Magnesium binding site 10 out
of 206 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg507
b:75.9
occ:1.00
|
MG
|
B:CLA507
|
0.0
|
75.9
|
1.0
|
NB
|
B:CLA507
|
2.0
|
75.9
|
1.0
|
ND
|
B:CLA507
|
2.0
|
75.9
|
1.0
|
NA
|
B:CLA507
|
2.1
|
75.9
|
1.0
|
NC
|
B:CLA507
|
2.1
|
75.9
|
1.0
|
C4D
|
B:CLA507
|
2.9
|
75.9
|
1.0
|
C1B
|
B:CLA507
|
3.0
|
75.9
|
1.0
|
C4A
|
B:CLA507
|
3.0
|
75.9
|
1.0
|
C4B
|
B:CLA507
|
3.1
|
75.9
|
1.0
|
C1C
|
B:CLA507
|
3.1
|
75.9
|
1.0
|
C4C
|
B:CLA507
|
3.1
|
75.9
|
1.0
|
C1A
|
B:CLA507
|
3.1
|
75.9
|
1.0
|
C1D
|
B:CLA507
|
3.2
|
75.9
|
1.0
|
CHB
|
B:CLA507
|
3.4
|
75.9
|
1.0
|
CHC
|
B:CLA507
|
3.4
|
75.9
|
1.0
|
C14
|
M:LMG101
|
3.5
|
85.3
|
1.0
|
CHA
|
B:CLA507
|
3.5
|
75.9
|
1.0
|
CHD
|
B:CLA507
|
3.5
|
75.9
|
1.0
|
C15
|
M:LMG101
|
3.7
|
85.3
|
1.0
|
C3D
|
B:CLA507
|
4.3
|
75.9
|
1.0
|
C2B
|
B:CLA507
|
4.3
|
75.9
|
1.0
|
C3B
|
B:CLA507
|
4.3
|
75.9
|
1.0
|
C2C
|
B:CLA507
|
4.3
|
75.9
|
1.0
|
C2D
|
B:CLA507
|
4.4
|
75.9
|
1.0
|
C3C
|
B:CLA507
|
4.4
|
75.9
|
1.0
|
C3A
|
B:CLA507
|
4.4
|
75.9
|
1.0
|
C17
|
M:LMG101
|
4.4
|
85.3
|
1.0
|
C2A
|
B:CLA507
|
4.4
|
75.9
|
1.0
|
C18
|
M:LMG101
|
4.7
|
85.3
|
1.0
|
C16
|
M:LMG101
|
4.8
|
85.3
|
1.0
|
SD
|
B:MET37
|
4.8
|
71.7
|
1.0
|
C11
|
M:LMG101
|
4.8
|
85.3
|
1.0
|
C13
|
M:LMG101
|
4.9
|
85.3
|
1.0
|
CBD
|
B:CLA507
|
4.9
|
75.9
|
1.0
|
|
Reference:
S.Zhao,
L.Shen,
X.Li,
Q.Tao,
Z.Li,
C.Xu,
C.Zhou,
Y.Yang,
M.Sang,
G.Han,
L.J.Yu,
T.Kuang,
J.R.Shen,
W.Wang.
Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana. Nat Commun V. 14 8164 2023.
ISSN: ESSN 2041-1723
PubMed: 38071196
DOI: 10.1038/S41467-023-44055-8
Page generated: Fri Oct 4 12:04:19 2024
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