Magnesium in PDB 8j5p: Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX

The structure of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX also contains other interesting chemical elements:

Iron

(Fe)

5 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX (pdb code 8j5p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 48 binding sites of Magnesium where determined in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX, PDB code: 8j5p:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 48 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ 0:Mg101 b:38.7 occ:1.00 MG 0:BCL101 0.0 38.7 1.0 ND 0:BCL101 2.0 34.0 1.0 NB 0:BCL101 2.1 35.9 1.0 NC 0:BCL101 2.1 28.0 1.0 NA 0:BCL101 2.2 34.2 1.0 NE2 0:HIS44 2.2 27.4 1.0 C4D 0:BCL101 3.0 28.5 1.0 C4B 0:BCL101 3.1 35.6 1.0 C1B 0:BCL101 3.1 34.1 1.0 CD2 0:HIS44 3.1 24.5 1.0 C1C 0:BCL101 3.1 26.4 1.0 C4A 0:BCL101 3.1 31.8 1.0 C1D 0:BCL101 3.2 31.5 1.0 C4C 0:BCL101 3.2 26.7 1.0 C1A 0:BCL101 3.2 37.5 1.0 CE1 0:HIS44 3.2 23.4 1.0 CHC 0:BCL101 3.4 30.2 1.0 CHB 0:BCL101 3.4 34.2 1.0 CHA 0:BCL101 3.5 34.0 1.0 CHD 0:BCL101 3.5 30.6 1.0 C3D 0:BCL101 4.2 28.1 1.0 CG 0:HIS44 4.3 29.3 1.0 C2B 0:BCL101 4.3 30.2 1.0 ND1 0:HIS44 4.3 28.0 1.0 C3B 0:BCL101 4.3 35.6 1.0 CMB 7:BCL101 4.3 35.1 1.0 C2D 0:BCL101 4.3 30.3 1.0 C2A 0:BCL101 4.4 29.8 1.0 CBB 7:BCL101 4.4 34.4 1.0 C3C 0:BCL101 4.4 28.8 1.0 C2C 0:BCL101 4.4 32.3 1.0 C3A 0:BCL101 4.4 31.0 1.0 CAB 7:BCL101 4.6 35.2 1.0 OBB 7:BCL101 4.8 39.0 1.0 CAA 0:BCL101 4.8 31.8 1.0 CBD 0:BCL101 4.9 30.2 1.0

Magnesium binding site 2 out of 48 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ 0:Mg102 b:39.7 occ:1.00 MG 0:BCL102 0.0 39.7 1.0 ND 0:BCL102 2.0 39.4 1.0 NB 0:BCL102 2.1 44.0 1.0 NC 0:BCL102 2.1 34.8 1.0 NA 0:BCL102 2.2 37.2 1.0 NE2 0:HIS26 2.2 40.1 1.0 CE1 0:HIS26 3.0 39.1 1.0 C4D 0:BCL102 3.0 40.9 1.0 C4B 0:BCL102 3.1 39.6 1.0 C1B 0:BCL102 3.1 41.2 1.0 C1C 0:BCL102 3.1 38.9 1.0 C4A 0:BCL102 3.1 38.2 1.0 C1D 0:BCL102 3.1 40.5 1.0 C4C 0:BCL102 3.2 37.4 1.0 C1A 0:BCL102 3.2 40.2 1.0 CD2 0:HIS26 3.3 34.3 1.0 CHC 0:BCL102 3.4 36.9 1.0 CHB 0:BCL102 3.4 39.8 1.0 CHA 0:BCL102 3.4 44.4 1.0 CHD 0:BCL102 3.5 37.9 1.0 ND1 0:HIS26 4.2 38.6 1.0 C3D 0:BCL102 4.2 37.5 1.0 C2B 0:BCL102 4.3 37.8 1.0 C3B 0:BCL102 4.3 40.5 1.0 C2D 0:BCL102 4.3 40.3 1.0 CG 0:HIS26 4.4 34.2 1.0 C3A 0:BCL102 4.4 42.9 1.0 C2C 0:BCL102 4.4 42.0 1.0 C2A 0:BCL102 4.4 39.6 1.0 C3C 0:BCL102 4.5 38.6 1.0 CBD 0:BCL102 4.9 42.3 1.0 OAA 8:KGD103 4.9 44.2 1.0

Magnesium binding site 3 out of 48 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg101 b:33.9 occ:1.00 MG 1:BCL101 0.0 33.9 1.0 ND 1:BCL101 2.0 39.4 1.0 NB 1:BCL101 2.1 34.4 1.0 NC 1:BCL101 2.2 37.2 1.0 NA 1:BCL101 2.2 35.5 1.0 NE2 1:HIS27 2.2 27.6 1.0 CD2 1:HIS27 2.8 17.0 1.0 C4D 1:BCL101 3.0 34.8 1.0 C4B 1:BCL101 3.1 37.2 1.0 C1B 1:BCL101 3.1 36.6 1.0 C1C 1:BCL101 3.1 34.2 1.0 C1D 1:BCL101 3.2 36.9 1.0 C4A 1:BCL101 3.2 35.1 1.0 C4C 1:BCL101 3.2 39.7 1.0 C1A 1:BCL101 3.2 34.3 1.0 CE1 1:HIS27 3.4 32.4 1.0 CHC 1:BCL101 3.4 37.3 1.0 CHB 1:BCL101 3.4 37.5 1.0 CHA 1:BCL101 3.5 34.1 1.0 CHD 1:BCL101 3.5 35.0 1.0 CG 1:HIS27 4.1 25.5 1.0 C3D 1:BCL101 4.2 33.5 1.0 C2B 1:BCL101 4.3 33.5 1.0 ND1 1:HIS27 4.3 35.7 1.0 C3B 1:BCL101 4.3 36.5 1.0 C2D 1:BCL101 4.3 35.8 1.0 C2C 1:BCL101 4.5 34.0 1.0 C3C 1:BCL101 4.5 36.7 1.0 C2A 1:BCL101 4.5 33.6 1.0 C3A 1:BCL101 4.5 32.7 1.0 CBB 4:BCL101 4.6 38.7 1.0 CMD 2:BCL101 4.9 30.0 1.0 CAS 3:KGD102 4.9 41.3 1.0 CBD 1:BCL101 4.9 32.8 1.0 CMB 4:BCL101 5.0 36.0 1.0

Magnesium binding site 4 out of 48 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg101 b:44.3 occ:1.00 MG 2:BCL101 0.0 44.3 1.0 ND 2:BCL101 2.0 33.7 1.0 NB 2:BCL101 2.1 40.0 1.0 NC 2:BCL101 2.1 33.7 1.0 NA 2:BCL101 2.2 37.3 1.0 NE2 2:HIS44 2.2 36.0 1.0 C4D 2:BCL101 3.0 33.2 1.0 C4B 2:BCL101 3.1 35.5 1.0 C1B 2:BCL101 3.1 34.8 1.0 C1C 2:BCL101 3.1 30.9 1.0 CE1 2:HIS44 3.1 30.2 1.0 C4A 2:BCL101 3.1 34.9 1.0 C1D 2:BCL101 3.1 37.2 1.0 C4C 2:BCL101 3.2 36.2 1.0 C1A 2:BCL101 3.2 35.2 1.0 CD2 2:HIS44 3.2 32.4 1.0 CHC 2:BCL101 3.4 35.7 1.0 CHB 2:BCL101 3.4 33.2 1.0 CHA 2:BCL101 3.5 34.0 1.0 CHD 2:BCL101 3.5 37.9 1.0 C3D 2:BCL101 4.2 36.4 1.0 ND1 2:HIS44 4.3 28.0 1.0 CD1 C:ILE42 4.3 24.6 1.0 C2B 2:BCL101 4.3 34.9 1.0 C3B 2:BCL101 4.3 34.9 1.0 C2D 2:BCL101 4.3 35.0 1.0 CG 2:HIS44 4.3 27.3 1.0 C2A 2:BCL101 4.4 36.3 1.0 C3C 2:BCL101 4.4 29.6 1.0 C2C 2:BCL101 4.4 31.8 1.0 C3A 2:BCL101 4.5 39.3 1.0 CBD 2:BCL101 4.8 34.4 1.0 CAA 2:BCL101 4.9 35.3 1.0

Magnesium binding site 5 out of 48 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg102 b:35.9 occ:1.00 MG 2:BCL102 0.0 35.9 1.0 ND 2:BCL102 2.0 45.0 1.0 NB 2:BCL102 2.1 41.9 1.0 NC 2:BCL102 2.1 40.6 1.0 NA 2:BCL102 2.2 42.2 1.0 NE2 2:HIS26 2.2 51.7 1.0 C4D 2:BCL102 3.0 44.2 1.0 CD2 2:HIS26 3.0 46.5 1.0 C4B 2:BCL102 3.1 43.6 1.0 C1B 2:BCL102 3.1 42.4 1.0 C1C 2:BCL102 3.1 45.7 1.0 C1D 2:BCL102 3.1 45.3 1.0 C4A 2:BCL102 3.2 40.3 1.0 C4C 2:BCL102 3.2 40.0 1.0 C1A 2:BCL102 3.2 44.6 1.0 CE1 2:HIS26 3.3 48.5 1.0 CHC 2:BCL102 3.4 47.7 1.0 CHB 2:BCL102 3.4 41.5 1.0 CHA 2:BCL102 3.4 40.4 1.0 CHD 2:BCL102 3.5 42.6 1.0 C3D 2:BCL102 4.2 43.2 1.0 CG 2:HIS26 4.2 47.5 1.0 C2B 2:BCL102 4.3 44.7 1.0 C2D 2:BCL102 4.3 43.6 1.0 ND1 2:HIS26 4.3 44.0 1.0 C3B 2:BCL102 4.3 42.1 1.0 C2C 2:BCL102 4.4 40.9 1.0 C3C 2:BCL102 4.5 40.4 1.0 C3A 2:BCL102 4.5 44.7 1.0 C2A 2:BCL102 4.5 45.1 1.0 CBD 2:BCL102 4.9 38.9 1.0 CG2 2:VAL30 5.0 42.1 1.0

Magnesium binding site 6 out of 48 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ 3:Mg101 b:35.2 occ:1.00 MG 3:BCL101 0.0 35.2 1.0 ND 3:BCL101 2.0 32.9 1.0 NB 3:BCL101 2.1 34.1 1.0 NC 3:BCL101 2.1 32.3 1.0 NA 3:BCL101 2.2 38.3 1.0 NE2 3:HIS27 2.2 21.1 1.0 C4D 3:BCL101 3.0 30.6 1.0 C4B 3:BCL101 3.1 33.8 1.0 C1B 3:BCL101 3.1 32.8 1.0 CE1 3:HIS27 3.1 26.7 1.0 C1C 3:BCL101 3.1 34.5 1.0 C4A 3:BCL101 3.1 35.6 1.0 C1D 3:BCL101 3.2 36.1 1.0 C4C 3:BCL101 3.2 34.1 1.0 C1A 3:BCL101 3.2 35.0 1.0 CD2 3:HIS27 3.3 20.0 1.0 CHC 3:BCL101 3.4 32.9 1.0 CHB 3:BCL101 3.4 35.7 1.0 CHA 3:BCL101 3.5 34.0 1.0 CHD 3:BCL101 3.5 38.1 1.0 C3D 3:BCL101 4.2 28.1 1.0 ND1 3:HIS27 4.3 34.6 1.0 C2B 3:BCL101 4.3 32.7 1.0 C3B 3:BCL101 4.3 33.9 1.0 C2D 3:BCL101 4.3 33.5 1.0 CG 3:HIS27 4.4 28.6 1.0 C2C 3:BCL101 4.5 36.8 1.0 C3A 3:BCL101 4.5 32.6 1.0 C2A 3:BCL101 4.5 31.4 1.0 C3C 3:BCL101 4.5 34.5 1.0 CMD 4:BCL101 4.6 35.9 1.0 CBB 6:BCL101 4.6 33.4 1.0 CBD 3:BCL101 4.9 33.0 1.0

Magnesium binding site 7 out of 48 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ 4:Mg101 b:43.1 occ:1.00 MG 4:BCL101 0.0 43.1 1.0 ND 4:BCL101 2.0 34.1 1.0 NB 4:BCL101 2.1 37.5 1.0 NC 4:BCL101 2.1 32.9 1.0 NA 4:BCL101 2.2 42.4 1.0 NE2 4:HIS44 2.2 31.7 1.0 C4D 4:BCL101 3.0 31.2 1.0 C4B 4:BCL101 3.1 35.2 1.0 C1B 4:BCL101 3.1 33.6 1.0 C1C 4:BCL101 3.1 31.5 1.0 CD2 4:HIS44 3.1 30.9 1.0 C4A 4:BCL101 3.1 36.0 1.0 C1D 4:BCL101 3.1 35.9 1.0 C4C 4:BCL101 3.2 32.6 1.0 C1A 4:BCL101 3.2 38.7 1.0 CE1 4:HIS44 3.2 28.7 1.0 CHC 4:BCL101 3.4 34.9 1.0 CHB 4:BCL101 3.4 34.0 1.0 CHA 4:BCL101 3.4 33.5 1.0 CHD 4:BCL101 3.5 35.2 1.0 CMB 1:BCL101 4.2 34.2 1.0 C3D 4:BCL101 4.2 32.3 1.0 C2B 4:BCL101 4.3 35.4 1.0 CG 4:HIS44 4.3 28.2 1.0 ND1 4:HIS44 4.3 34.3 1.0 C2D 4:BCL101 4.3 34.7 1.0 C3B 4:BCL101 4.3 35.9 1.0 C3C 4:BCL101 4.4 29.9 1.0 C2A 4:BCL101 4.4 31.8 1.0 C2C 4:BCL101 4.4 32.1 1.0 C3A 4:BCL101 4.4 33.1 1.0 CBB 1:BCL101 4.7 38.8 1.0 CAB 1:BCL101 4.8 35.9 1.0 CAA 4:BCL101 4.9 33.5 1.0 CBD 4:BCL101 4.9 32.7 1.0 C2B 1:BCL101 4.9 33.5 1.0 CAC 4:BCL101 5.0 35.8 1.0

Magnesium binding site 8 out of 48 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ 4:Mg102 b:45.5 occ:1.00 MG 4:BCL102 0.0 45.5 1.0 ND 4:BCL102 2.0 44.5 1.0 NB 4:BCL102 2.1 45.1 1.0 NC 4:BCL102 2.1 39.2 1.0 NA 4:BCL102 2.2 41.6 1.0 NE2 4:HIS26 2.2 45.9 1.0 C4D 4:BCL102 3.0 41.6 1.0 C4B 4:BCL102 3.1 44.0 1.0 C1B 4:BCL102 3.1 41.8 1.0 C1C 4:BCL102 3.1 42.4 1.0 CE1 4:HIS26 3.1 45.5 1.0 C4A 4:BCL102 3.1 44.0 1.0 C1D 4:BCL102 3.2 43.7 1.0 C4C 4:BCL102 3.2 41.7 1.0 C1A 4:BCL102 3.2 41.2 1.0 CD2 4:HIS26 3.2 40.7 1.0 CHC 4:BCL102 3.4 44.2 1.0 CHB 4:BCL102 3.4 43.7 1.0 CHA 4:BCL102 3.4 39.1 1.0 CHD 4:BCL102 3.5 40.6 1.0 C3D 4:BCL102 4.2 44.3 1.0 ND1 4:HIS26 4.3 41.8 1.0 C2B 4:BCL102 4.3 40.8 1.0 C3B 4:BCL102 4.3 43.7 1.0 C2D 4:BCL102 4.3 42.4 1.0 CG 4:HIS26 4.3 40.9 1.0 C3A 4:BCL102 4.4 44.5 1.0 C2C 4:BCL102 4.4 39.7 1.0 C2A 4:BCL102 4.4 47.2 1.0 C3C 4:BCL102 4.5 43.8 1.0 CBD 4:BCL102 4.9 43.1 1.0

Magnesium binding site 9 out of 48 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ 5:Mg101 b:36.1 occ:1.00 MG 5:BCL101 0.0 36.1 1.0 ND 5:BCL101 2.0 32.8 1.0 NB 5:BCL101 2.1 38.7 1.0 NC 5:BCL101 2.2 39.1 1.0 NA 5:BCL101 2.2 40.9 1.0 NE2 5:HIS27 2.2 22.3 1.0 CD2 5:HIS27 2.9 15.1 1.0 C4D 5:BCL101 3.0 35.2 1.0 C4B 5:BCL101 3.1 34.4 1.0 C1B 5:BCL101 3.1 35.8 1.0 C1C 5:BCL101 3.1 37.3 1.0 C1D 5:BCL101 3.2 34.2 1.0 C4A 5:BCL101 3.2 31.4 1.0 C4C 5:BCL101 3.2 35.9 1.0 C1A 5:BCL101 3.2 37.5 1.0 CE1 5:HIS27 3.4 32.6 1.0 CHC 5:BCL101 3.4 36.9 1.0 CHB 5:BCL101 3.4 33.1 1.0 CHA 5:BCL101 3.5 36.6 1.0 CHD 5:BCL101 3.5 35.7 1.0 CG 5:HIS27 4.2 19.1 1.0 C3D 5:BCL101 4.2 34.5 1.0 CMD 6:BCL101 4.3 26.2 1.0 C2B 5:BCL101 4.3 33.8 1.0 C2D 5:BCL101 4.3 33.8 1.0 C3B 5:BCL101 4.3 30.9 1.0 ND1 5:HIS27 4.3 30.5 1.0 C2C 5:BCL101 4.5 33.8 1.0 C3C 5:BCL101 4.5 33.0 1.0 C3A 5:BCL101 4.5 32.3 1.0 C2A 5:BCL101 4.5 33.4 1.0 CBD 5:BCL101 4.9 29.6 1.0 CBB 8:BCL101 4.9 36.0 1.0

Magnesium binding site 10 out of 48 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg101 b:38.8 occ:1.00 MG 6:BCL101 0.0 38.8 1.0 ND 6:BCL101 2.0 34.8 1.0 NB 6:BCL101 2.1 35.2 1.0 NC 6:BCL101 2.1 34.6 1.0 NA 6:BCL101 2.2 33.8 1.0 NE2 6:HIS44 2.2 30.2 1.0 C4D 6:BCL101 3.0 32.6 1.0 C4B 6:BCL101 3.1 37.0 1.0 C1B 6:BCL101 3.1 33.3 1.0 C1C 6:BCL101 3.1 29.3 1.0 C4A 6:BCL101 3.1 29.3 1.0 C1D 6:BCL101 3.2 32.7 1.0 CE1 6:HIS44 3.2 31.9 1.0 C4C 6:BCL101 3.2 30.2 1.0 CD2 6:HIS44 3.2 24.4 1.0 C1A 6:BCL101 3.2 36.2 1.0 CHC 6:BCL101 3.4 35.0 1.0 CHB 6:BCL101 3.4 32.1 1.0 CHA 6:BCL101 3.5 34.0 1.0 CHD 6:BCL101 3.5 31.9 1.0 C3D 6:BCL101 4.2 32.2 1.0 ND1 6:HIS44 4.3 28.9 1.0 C2B 6:BCL101 4.3 28.9 1.0 CMB 3:BCL101 4.3 34.1 1.0 CG 6:HIS44 4.3 24.5 1.0 C3B 6:BCL101 4.3 30.5 1.0 C2D 6:BCL101 4.3 26.1 1.0 C2A 6:BCL101 4.4 30.6 1.0 C3C 6:BCL101 4.4 28.1 1.0 C2C 6:BCL101 4.4 31.5 1.0 C3A 6:BCL101 4.4 28.4 1.0 CBB 3:BCL101 4.6 34.7 1.0 CAA 6:BCL101 4.8 33.6 1.0 CBD 6:BCL101 4.9 32.1 1.0 CAB 3:BCL101 4.9 35.4 1.0 C2B 3:BCL101 5.0 32.7 1.0

X.Xu, J.Xin. Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii To Be Published.