Magnesium in PDB 8j6z: Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
Enzymatic activity of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
All present enzymatic activity of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2):
1.97.1.12;
Other elements in 8j6z:
The structure of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
199;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
(pdb code 8j6z). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 199 binding sites of Magnesium where determined in the
Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2), PDB code: 8j6z:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 199 in 8j6z
Go back to
Magnesium Binding Sites List in 8j6z
Magnesium binding site 1 out
of 199 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg601
b:45.2
occ:1.00
|
MG
|
1:CHL601
|
0.0
|
45.2
|
1.0
|
NA
|
1:CHL601
|
2.0
|
44.7
|
1.0
|
ND
|
1:CHL601
|
2.0
|
44.9
|
1.0
|
NB
|
1:CHL601
|
2.0
|
49.1
|
1.0
|
NC
|
1:CHL601
|
2.1
|
47.7
|
1.0
|
O
|
1:TRP48
|
2.5
|
40.1
|
1.0
|
C12
|
1:LHG615
|
2.6
|
56.9
|
1.0
|
C4D
|
1:CHL601
|
2.9
|
42.6
|
1.0
|
C4A
|
1:CHL601
|
3.0
|
47.2
|
1.0
|
C1A
|
1:CHL601
|
3.0
|
43.6
|
1.0
|
C1B
|
1:CHL601
|
3.0
|
47.5
|
1.0
|
C1C
|
1:CHL601
|
3.1
|
47.8
|
1.0
|
C4B
|
1:CHL601
|
3.1
|
48.1
|
1.0
|
C4C
|
1:CHL601
|
3.1
|
43.1
|
1.0
|
C1D
|
1:CHL601
|
3.2
|
47.4
|
1.0
|
C13
|
1:LHG615
|
3.3
|
58.9
|
1.0
|
CHB
|
1:CHL601
|
3.3
|
52.5
|
1.0
|
CHC
|
1:CHL601
|
3.4
|
50.6
|
1.0
|
CHA
|
1:CHL601
|
3.4
|
41.7
|
1.0
|
CHD
|
1:CHL601
|
3.5
|
45.6
|
1.0
|
C11
|
1:LHG615
|
3.6
|
51.7
|
1.0
|
C
|
1:TRP48
|
3.6
|
38.2
|
1.0
|
C10
|
1:LHG615
|
4.1
|
52.1
|
1.0
|
CA
|
1:TRP48
|
4.1
|
33.2
|
1.0
|
C3D
|
1:CHL601
|
4.2
|
45.8
|
1.0
|
C2A
|
1:CHL601
|
4.3
|
43.0
|
1.0
|
C3A
|
1:CHL601
|
4.3
|
41.5
|
1.0
|
C3B
|
1:CHL601
|
4.4
|
39.0
|
1.0
|
C2C
|
1:CHL601
|
4.4
|
44.5
|
1.0
|
C2B
|
1:CHL601
|
4.4
|
37.1
|
1.0
|
C2D
|
1:CHL601
|
4.4
|
46.0
|
1.0
|
C3C
|
1:CHL601
|
4.4
|
37.4
|
1.0
|
C14
|
1:LHG615
|
4.4
|
59.5
|
1.0
|
N
|
1:MET49
|
4.6
|
38.8
|
1.0
|
CB
|
1:TRP48
|
4.7
|
35.6
|
1.0
|
CBD
|
1:CHL601
|
4.9
|
44.2
|
1.0
|
CA
|
1:MET49
|
5.0
|
34.6
|
1.0
|
|
Magnesium binding site 2 out
of 199 in 8j6z
Go back to
Magnesium Binding Sites List in 8j6z
Magnesium binding site 2 out
of 199 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg602
b:30.8
occ:1.00
|
MG
|
1:CLA602
|
0.0
|
30.8
|
1.0
|
NB
|
1:CLA602
|
2.0
|
30.3
|
1.0
|
ND
|
1:CLA602
|
2.0
|
34.6
|
1.0
|
NC
|
1:CLA602
|
2.1
|
30.2
|
1.0
|
NA
|
1:CLA602
|
2.1
|
29.6
|
1.0
|
OE2
|
1:GLU87
|
2.7
|
30.6
|
1.0
|
C38
|
1:XAT614
|
2.8
|
23.9
|
1.0
|
C4D
|
1:CLA602
|
2.9
|
32.3
|
1.0
|
C1B
|
1:CLA602
|
3.0
|
22.8
|
1.0
|
C4A
|
1:CLA602
|
3.0
|
25.6
|
1.0
|
C4B
|
1:CLA602
|
3.1
|
30.9
|
1.0
|
C1C
|
1:CLA602
|
3.1
|
28.3
|
1.0
|
C4C
|
1:CLA602
|
3.1
|
29.9
|
1.0
|
C1A
|
1:CLA602
|
3.2
|
29.9
|
1.0
|
C1D
|
1:CLA602
|
3.2
|
32.5
|
1.0
|
CHB
|
1:CLA602
|
3.4
|
22.2
|
1.0
|
CHC
|
1:CLA602
|
3.4
|
31.5
|
1.0
|
CHA
|
1:CLA602
|
3.5
|
27.6
|
1.0
|
CHD
|
1:CLA602
|
3.5
|
28.5
|
1.0
|
C25
|
1:XAT614
|
3.7
|
31.2
|
1.0
|
CD
|
1:GLU87
|
3.7
|
37.5
|
1.0
|
O24
|
1:XAT614
|
3.9
|
40.7
|
1.0
|
C3D
|
1:CLA602
|
4.3
|
26.1
|
1.0
|
NH1
|
1:ARG196
|
4.3
|
28.2
|
1.0
|
C2B
|
1:CLA602
|
4.3
|
25.4
|
1.0
|
NE
|
1:ARG196
|
4.3
|
30.1
|
1.0
|
C3B
|
1:CLA602
|
4.3
|
29.1
|
1.0
|
C2C
|
1:CLA602
|
4.3
|
20.6
|
1.0
|
C2D
|
1:CLA602
|
4.4
|
31.3
|
1.0
|
C3C
|
1:CLA602
|
4.4
|
25.9
|
1.0
|
CG
|
1:GLU87
|
4.4
|
21.2
|
1.0
|
C3A
|
1:CLA602
|
4.4
|
27.4
|
1.0
|
C2A
|
1:CLA602
|
4.5
|
24.1
|
1.0
|
C27
|
1:XAT614
|
4.5
|
35.2
|
1.0
|
OE1
|
1:GLU87
|
4.6
|
39.8
|
1.0
|
C26
|
1:XAT614
|
4.6
|
38.4
|
1.0
|
CZ
|
1:ARG196
|
4.7
|
29.4
|
1.0
|
C24
|
1:XAT614
|
4.7
|
34.3
|
1.0
|
O2A
|
1:CLA602
|
4.8
|
33.8
|
1.0
|
C28
|
1:XAT614
|
4.9
|
33.4
|
1.0
|
CBD
|
1:CLA602
|
4.9
|
17.8
|
1.0
|
|
Magnesium binding site 3 out
of 199 in 8j6z
Go back to
Magnesium Binding Sites List in 8j6z
Magnesium binding site 3 out
of 199 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg603
b:48.2
occ:1.00
|
MG
|
1:CLA603
|
0.0
|
48.2
|
1.0
|
NB
|
1:CLA603
|
2.0
|
35.5
|
1.0
|
ND
|
1:CLA603
|
2.0
|
43.0
|
1.0
|
NC
|
1:CLA603
|
2.1
|
42.5
|
1.0
|
NA
|
1:CLA603
|
2.1
|
37.2
|
1.0
|
C4D
|
1:CLA603
|
2.9
|
39.3
|
1.0
|
NE2
|
1:HIS90
|
3.0
|
18.4
|
1.0
|
C1B
|
1:CLA603
|
3.0
|
33.0
|
1.0
|
C4A
|
1:CLA603
|
3.0
|
38.4
|
1.0
|
C4B
|
1:CLA603
|
3.1
|
38.2
|
1.0
|
C1C
|
1:CLA603
|
3.1
|
41.6
|
1.0
|
C4C
|
1:CLA603
|
3.1
|
39.3
|
1.0
|
C1D
|
1:CLA603
|
3.1
|
39.7
|
1.0
|
C1A
|
1:CLA603
|
3.2
|
31.7
|
1.0
|
CHB
|
1:CLA603
|
3.4
|
37.5
|
1.0
|
CHC
|
1:CLA603
|
3.4
|
34.4
|
1.0
|
CHA
|
1:CLA603
|
3.5
|
35.5
|
1.0
|
CHD
|
1:CLA603
|
3.5
|
40.0
|
1.0
|
CE1
|
1:HIS90
|
3.8
|
18.6
|
1.0
|
CD2
|
1:HIS90
|
4.0
|
15.1
|
1.0
|
C3D
|
1:CLA603
|
4.2
|
37.2
|
1.0
|
C2B
|
1:CLA603
|
4.3
|
36.6
|
1.0
|
C3B
|
1:CLA603
|
4.3
|
41.5
|
1.0
|
C2C
|
1:CLA603
|
4.3
|
42.2
|
1.0
|
C2D
|
1:CLA603
|
4.3
|
36.6
|
1.0
|
C3C
|
1:CLA603
|
4.4
|
37.8
|
1.0
|
C3A
|
1:CLA603
|
4.4
|
38.2
|
1.0
|
C2A
|
1:CLA603
|
4.5
|
35.9
|
1.0
|
CBD
|
1:CLA603
|
4.9
|
43.7
|
1.0
|
ND1
|
1:HIS90
|
5.0
|
22.5
|
1.0
|
|
Magnesium binding site 4 out
of 199 in 8j6z
Go back to
Magnesium Binding Sites List in 8j6z
Magnesium binding site 4 out
of 199 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg604
b:83.8
occ:1.00
|
MG
|
1:CLA604
|
0.0
|
83.8
|
1.0
|
NB
|
1:CLA604
|
2.0
|
80.3
|
1.0
|
ND
|
1:CLA604
|
2.0
|
82.0
|
1.0
|
NC
|
1:CLA604
|
2.1
|
85.1
|
1.0
|
NA
|
1:CLA604
|
2.1
|
82.9
|
1.0
|
C4D
|
1:CLA604
|
2.9
|
80.4
|
1.0
|
C1B
|
1:CLA604
|
3.0
|
78.4
|
1.0
|
C4A
|
1:CLA604
|
3.0
|
79.2
|
1.0
|
C4B
|
1:CLA604
|
3.1
|
80.9
|
1.0
|
C1C
|
1:CLA604
|
3.1
|
80.4
|
1.0
|
C4C
|
1:CLA604
|
3.1
|
78.9
|
1.0
|
C1A
|
1:CLA604
|
3.2
|
81.6
|
1.0
|
C1D
|
1:CLA604
|
3.2
|
80.4
|
1.0
|
CHB
|
1:CLA604
|
3.4
|
78.1
|
1.0
|
CHC
|
1:CLA604
|
3.4
|
79.8
|
1.0
|
CHA
|
1:CLA604
|
3.5
|
79.5
|
1.0
|
CHD
|
1:CLA604
|
3.5
|
76.3
|
1.0
|
O1A
|
1:CLA604
|
3.6
|
85.4
|
1.0
|
O3
|
1:XAT614
|
3.6
|
57.6
|
1.0
|
C4
|
1:XAT614
|
4.0
|
38.6
|
1.0
|
C4
|
1:CLA604
|
4.0
|
79.6
|
1.0
|
C3D
|
1:CLA604
|
4.3
|
82.3
|
1.0
|
C2B
|
1:CLA604
|
4.3
|
77.9
|
1.0
|
C3B
|
1:CLA604
|
4.3
|
80.1
|
1.0
|
C2C
|
1:CLA604
|
4.3
|
79.5
|
1.0
|
C2D
|
1:CLA604
|
4.4
|
80.2
|
1.0
|
C3C
|
1:CLA604
|
4.4
|
77.7
|
1.0
|
CGA
|
1:CLA604
|
4.4
|
86.4
|
1.0
|
C3A
|
1:CLA604
|
4.4
|
76.5
|
1.0
|
C3
|
1:XAT614
|
4.4
|
43.6
|
1.0
|
C2A
|
1:CLA604
|
4.5
|
77.8
|
1.0
|
C1
|
1:CLA604
|
4.6
|
84.8
|
1.0
|
O
|
1:GLY100
|
4.7
|
64.0
|
1.0
|
CA
|
1:GLY100
|
4.9
|
63.5
|
1.0
|
CBD
|
1:CLA604
|
4.9
|
80.4
|
1.0
|
O2A
|
1:CLA604
|
5.0
|
89.5
|
1.0
|
|
Magnesium binding site 5 out
of 199 in 8j6z
Go back to
Magnesium Binding Sites List in 8j6z
Magnesium binding site 5 out
of 199 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg605
b:98.4
occ:1.00
|
MG
|
1:CLA605
|
0.0
|
98.4
|
1.0
|
NB
|
1:CLA605
|
2.0
|
98.0
|
1.0
|
ND
|
1:CLA605
|
2.0
|
103.3
|
1.0
|
NC
|
1:CLA605
|
2.1
|
100.5
|
1.0
|
NA
|
1:CLA605
|
2.1
|
99.7
|
1.0
|
C4D
|
1:CLA605
|
2.9
|
102.5
|
1.0
|
C1B
|
1:CLA605
|
3.0
|
99.1
|
1.0
|
C4A
|
1:CLA605
|
3.0
|
100.4
|
1.0
|
C4B
|
1:CLA605
|
3.1
|
97.7
|
1.0
|
C1C
|
1:CLA605
|
3.1
|
99.9
|
1.0
|
C4C
|
1:CLA605
|
3.1
|
98.7
|
1.0
|
C1D
|
1:CLA605
|
3.2
|
102.2
|
1.0
|
C1A
|
1:CLA605
|
3.2
|
99.9
|
1.0
|
CHB
|
1:CLA605
|
3.4
|
98.9
|
1.0
|
CHC
|
1:CLA605
|
3.4
|
96.9
|
1.0
|
CHA
|
1:CLA605
|
3.5
|
100.6
|
1.0
|
CHD
|
1:CLA605
|
3.5
|
98.5
|
1.0
|
OE1
|
1:GLU145
|
4.1
|
99.0
|
1.0
|
C3D
|
1:CLA605
|
4.3
|
101.2
|
1.0
|
C2B
|
1:CLA605
|
4.3
|
100.0
|
1.0
|
C3B
|
1:CLA605
|
4.3
|
99.1
|
1.0
|
C2C
|
1:CLA605
|
4.3
|
101.1
|
1.0
|
C2D
|
1:CLA605
|
4.4
|
101.1
|
1.0
|
C3C
|
1:CLA605
|
4.4
|
99.7
|
1.0
|
C3A
|
1:CLA605
|
4.4
|
100.5
|
1.0
|
C2A
|
1:CLA605
|
4.5
|
101.4
|
1.0
|
CD
|
1:GLU145
|
4.5
|
96.8
|
1.0
|
C1
|
1:CLA604
|
4.5
|
84.8
|
1.0
|
CMB
|
1:CLA604
|
4.6
|
77.7
|
1.0
|
CG2
|
1:ILE141
|
4.9
|
111.4
|
1.0
|
O2A
|
1:CLA604
|
4.9
|
89.5
|
1.0
|
CBD
|
1:CLA605
|
4.9
|
100.7
|
1.0
|
OE2
|
1:GLU145
|
5.0
|
94.2
|
1.0
|
|
Magnesium binding site 6 out
of 199 in 8j6z
Go back to
Magnesium Binding Sites List in 8j6z
Magnesium binding site 6 out
of 199 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg606
b:110.4
occ:1.00
|
MG
|
1:CHL606
|
0.0
|
110.4
|
1.0
|
NA
|
1:CHL606
|
2.0
|
110.7
|
1.0
|
ND
|
1:CHL606
|
2.0
|
115.3
|
1.0
|
NB
|
1:CHL606
|
2.0
|
112.3
|
1.0
|
NC
|
1:CHL606
|
2.1
|
110.2
|
1.0
|
C4D
|
1:CHL606
|
2.9
|
114.4
|
1.0
|
C1A
|
1:CHL606
|
3.0
|
112.9
|
1.0
|
C4A
|
1:CHL606
|
3.0
|
110.8
|
1.0
|
C1B
|
1:CHL606
|
3.0
|
112.9
|
1.0
|
C1C
|
1:CHL606
|
3.1
|
112.4
|
1.0
|
C4B
|
1:CHL606
|
3.1
|
111.6
|
1.0
|
C4C
|
1:CHL606
|
3.1
|
111.4
|
1.0
|
C1D
|
1:CHL606
|
3.2
|
114.0
|
1.0
|
CHB
|
1:CHL606
|
3.3
|
111.5
|
1.0
|
OE1
|
1:GLN116
|
3.4
|
97.9
|
1.0
|
CHC
|
1:CHL606
|
3.4
|
112.3
|
1.0
|
CHA
|
1:CHL606
|
3.4
|
115.0
|
1.0
|
CHD
|
1:CHL606
|
3.5
|
112.9
|
1.0
|
CD
|
1:GLN116
|
3.9
|
98.2
|
1.0
|
NE2
|
1:GLN116
|
4.2
|
95.3
|
1.0
|
C3D
|
1:CHL606
|
4.2
|
113.9
|
1.0
|
C2A
|
1:CHL606
|
4.3
|
112.5
|
1.0
|
C3A
|
1:CHL606
|
4.3
|
112.2
|
1.0
|
C3B
|
1:CHL606
|
4.4
|
112.2
|
1.0
|
C2C
|
1:CHL606
|
4.4
|
114.3
|
1.0
|
C2B
|
1:CHL606
|
4.4
|
112.5
|
1.0
|
C2D
|
1:CHL606
|
4.4
|
110.7
|
1.0
|
C3C
|
1:CHL606
|
4.4
|
113.8
|
1.0
|
CB
|
1:GLN116
|
4.7
|
95.4
|
1.0
|
CBD
|
1:CHL606
|
4.9
|
113.9
|
1.0
|
CG
|
1:GLN116
|
4.9
|
97.7
|
1.0
|
CAA
|
1:CHL606
|
5.0
|
111.4
|
1.0
|
|
Magnesium binding site 7 out
of 199 in 8j6z
Go back to
Magnesium Binding Sites List in 8j6z
Magnesium binding site 7 out
of 199 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg607
b:57.2
occ:1.00
|
MG
|
1:CLA607
|
0.0
|
57.2
|
1.0
|
NB
|
1:CLA607
|
2.0
|
53.1
|
1.0
|
ND
|
1:CLA607
|
2.0
|
57.7
|
1.0
|
NC
|
1:CLA607
|
2.1
|
46.0
|
1.0
|
NA
|
1:CLA607
|
2.1
|
45.3
|
1.0
|
C4D
|
1:CLA607
|
2.9
|
51.7
|
1.0
|
C1B
|
1:CLA607
|
3.0
|
49.5
|
1.0
|
C4A
|
1:CLA607
|
3.0
|
43.2
|
1.0
|
C4B
|
1:CLA607
|
3.1
|
49.0
|
1.0
|
C1C
|
1:CLA607
|
3.1
|
47.7
|
1.0
|
C4C
|
1:CLA607
|
3.1
|
50.4
|
1.0
|
C1D
|
1:CLA607
|
3.2
|
45.6
|
1.0
|
C1A
|
1:CLA607
|
3.2
|
47.7
|
1.0
|
CHB
|
1:CLA607
|
3.4
|
45.4
|
1.0
|
CHC
|
1:CLA607
|
3.4
|
47.7
|
1.0
|
CHA
|
1:CLA607
|
3.5
|
44.8
|
1.0
|
CHD
|
1:CLA607
|
3.5
|
47.6
|
1.0
|
CE1
|
1:PHE172
|
3.7
|
60.2
|
1.0
|
CZ
|
1:PHE172
|
3.7
|
58.2
|
1.0
|
C3D
|
1:CLA607
|
4.3
|
44.0
|
1.0
|
C2B
|
1:CLA607
|
4.3
|
45.2
|
1.0
|
C3B
|
1:CLA607
|
4.3
|
45.2
|
1.0
|
C2C
|
1:CLA607
|
4.3
|
50.3
|
1.0
|
C2D
|
1:CLA607
|
4.4
|
39.1
|
1.0
|
C3C
|
1:CLA607
|
4.4
|
50.5
|
1.0
|
C3A
|
1:CLA607
|
4.4
|
46.1
|
1.0
|
C2A
|
1:CLA607
|
4.5
|
49.9
|
1.0
|
O2A
|
1:CLA607
|
4.5
|
57.4
|
1.0
|
CD1
|
1:PHE172
|
4.5
|
57.3
|
1.0
|
CE2
|
1:PHE172
|
4.6
|
58.7
|
1.0
|
CBD
|
1:CLA607
|
4.9
|
39.5
|
1.0
|
|
Magnesium binding site 8 out
of 199 in 8j6z
Go back to
Magnesium Binding Sites List in 8j6z
Magnesium binding site 8 out
of 199 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg608
b:61.5
occ:1.00
|
MG
|
1:CLA608
|
0.0
|
61.5
|
1.0
|
NB
|
1:CLA608
|
2.0
|
56.6
|
1.0
|
ND
|
1:CLA608
|
2.0
|
57.5
|
1.0
|
NC
|
1:CLA608
|
2.1
|
49.4
|
1.0
|
NA
|
1:CLA608
|
2.1
|
49.1
|
1.0
|
OE1
|
1:GLU153
|
2.7
|
64.5
|
1.0
|
C4D
|
1:CLA608
|
2.9
|
49.5
|
1.0
|
C1B
|
1:CLA608
|
3.0
|
51.7
|
1.0
|
C4A
|
1:CLA608
|
3.0
|
53.6
|
1.0
|
C4B
|
1:CLA608
|
3.1
|
59.6
|
1.0
|
C1C
|
1:CLA608
|
3.1
|
51.3
|
1.0
|
C4C
|
1:CLA608
|
3.1
|
46.9
|
1.0
|
C1D
|
1:CLA608
|
3.2
|
52.5
|
1.0
|
C1A
|
1:CLA608
|
3.2
|
47.6
|
1.0
|
CHB
|
1:CLA608
|
3.4
|
56.1
|
1.0
|
CD
|
1:GLU153
|
3.4
|
66.5
|
1.0
|
CHC
|
1:CLA608
|
3.4
|
54.8
|
1.0
|
CHA
|
1:CLA608
|
3.5
|
40.6
|
1.0
|
CHD
|
1:CLA608
|
3.5
|
49.9
|
1.0
|
CMD
|
1:CLA603
|
3.9
|
40.3
|
1.0
|
CG
|
1:GLU153
|
4.1
|
55.0
|
1.0
|
OE2
|
1:GLU153
|
4.1
|
70.2
|
1.0
|
C3D
|
1:CLA608
|
4.2
|
52.1
|
1.0
|
C2B
|
1:CLA608
|
4.3
|
50.7
|
1.0
|
C3B
|
1:CLA608
|
4.3
|
55.5
|
1.0
|
C2C
|
1:CLA608
|
4.3
|
55.0
|
1.0
|
C2D
|
1:CLA608
|
4.3
|
49.4
|
1.0
|
C3C
|
1:CLA608
|
4.4
|
51.2
|
1.0
|
C3A
|
1:CLA608
|
4.4
|
54.1
|
1.0
|
C2A
|
1:CLA608
|
4.5
|
54.2
|
1.0
|
CB
|
1:GLU153
|
4.5
|
53.6
|
1.0
|
NH1
|
1:ARG156
|
4.8
|
47.7
|
1.0
|
CBD
|
1:CLA608
|
4.9
|
42.9
|
1.0
|
|
Magnesium binding site 9 out
of 199 in 8j6z
Go back to
Magnesium Binding Sites List in 8j6z
Magnesium binding site 9 out
of 199 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg609
b:55.3
occ:1.00
|
MG
|
1:CLA609
|
0.0
|
55.3
|
1.0
|
NB
|
1:CLA609
|
2.0
|
56.8
|
1.0
|
ND
|
1:CLA609
|
2.0
|
49.7
|
1.0
|
NC
|
1:CLA609
|
2.1
|
48.7
|
1.0
|
NA
|
1:CLA609
|
2.1
|
49.0
|
1.0
|
C4D
|
1:CLA609
|
2.9
|
53.8
|
1.0
|
C1B
|
1:CLA609
|
3.0
|
51.9
|
1.0
|
C4A
|
1:CLA609
|
3.0
|
49.8
|
1.0
|
C4B
|
1:CLA609
|
3.0
|
52.2
|
1.0
|
C1C
|
1:CLA609
|
3.1
|
49.5
|
1.0
|
C4C
|
1:CLA609
|
3.1
|
50.6
|
1.0
|
C1D
|
1:CLA609
|
3.1
|
47.2
|
1.0
|
C1A
|
1:CLA609
|
3.1
|
48.3
|
1.0
|
C18
|
1:LUT616
|
3.2
|
44.8
|
1.0
|
CHC
|
1:CLA609
|
3.4
|
42.4
|
1.0
|
CHB
|
1:CLA609
|
3.4
|
50.1
|
1.0
|
CHA
|
1:CLA609
|
3.5
|
56.0
|
1.0
|
CHD
|
1:CLA609
|
3.5
|
43.1
|
1.0
|
OE2
|
1:GLU191
|
3.8
|
41.6
|
1.0
|
C3D
|
1:CLA609
|
4.2
|
52.0
|
1.0
|
C2B
|
1:CLA609
|
4.3
|
51.6
|
1.0
|
C3B
|
1:CLA609
|
4.3
|
53.7
|
1.0
|
C2D
|
1:CLA609
|
4.3
|
54.3
|
1.0
|
C2C
|
1:CLA609
|
4.3
|
62.3
|
1.0
|
C3C
|
1:CLA609
|
4.3
|
66.8
|
1.0
|
C3A
|
1:CLA609
|
4.4
|
48.8
|
1.0
|
NH1
|
1:ARG92
|
4.4
|
25.8
|
1.0
|
C2A
|
1:CLA609
|
4.4
|
44.3
|
1.0
|
C5
|
1:LUT616
|
4.5
|
43.0
|
1.0
|
NE
|
1:ARG92
|
4.5
|
32.1
|
1.0
|
CD
|
1:GLU191
|
4.7
|
41.4
|
1.0
|
C4
|
1:LUT616
|
4.7
|
47.8
|
1.0
|
CZ
|
1:ARG92
|
4.8
|
24.9
|
1.0
|
CBA
|
1:CLA609
|
4.9
|
52.6
|
1.0
|
CBD
|
1:CLA609
|
4.9
|
57.7
|
1.0
|
|
Magnesium binding site 10 out
of 199 in 8j6z
Go back to
Magnesium Binding Sites List in 8j6z
Magnesium binding site 10 out
of 199 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg610
b:61.2
occ:1.00
|
MG
|
1:CLA610
|
0.0
|
61.2
|
1.0
|
NB
|
1:CLA610
|
2.0
|
60.4
|
1.0
|
ND
|
1:CLA610
|
2.0
|
65.4
|
1.0
|
NC
|
1:CLA610
|
2.1
|
62.3
|
1.0
|
NA
|
1:CLA610
|
2.1
|
59.5
|
1.0
|
O4
|
1:LHG615
|
2.7
|
59.4
|
1.0
|
C4D
|
1:CLA610
|
2.9
|
60.6
|
1.0
|
C1B
|
1:CLA610
|
3.0
|
59.0
|
1.0
|
C4A
|
1:CLA610
|
3.0
|
65.5
|
1.0
|
C4B
|
1:CLA610
|
3.1
|
64.8
|
1.0
|
C1C
|
1:CLA610
|
3.1
|
60.8
|
1.0
|
C4C
|
1:CLA610
|
3.1
|
62.4
|
1.0
|
C1D
|
1:CLA610
|
3.2
|
61.7
|
1.0
|
C1A
|
1:CLA610
|
3.2
|
59.1
|
1.0
|
O3
|
1:LHG615
|
3.2
|
58.6
|
1.0
|
O2
|
1:LHG615
|
3.3
|
58.1
|
1.0
|
CHB
|
1:CLA610
|
3.4
|
61.6
|
1.0
|
CHC
|
1:CLA610
|
3.4
|
62.8
|
1.0
|
P
|
1:LHG615
|
3.4
|
75.6
|
1.0
|
CHA
|
1:CLA610
|
3.5
|
60.0
|
1.0
|
CHD
|
1:CLA610
|
3.5
|
57.8
|
1.0
|
O6
|
1:LHG615
|
3.9
|
56.8
|
1.0
|
C3
|
1:LHG615
|
4.1
|
60.8
|
1.0
|
C3D
|
1:CLA610
|
4.3
|
60.1
|
1.0
|
C2B
|
1:CLA610
|
4.3
|
62.5
|
1.0
|
C3B
|
1:CLA610
|
4.3
|
65.0
|
1.0
|
C2
|
1:LHG615
|
4.3
|
59.2
|
1.0
|
C2C
|
1:CLA610
|
4.3
|
61.7
|
1.0
|
C2D
|
1:CLA610
|
4.4
|
60.5
|
1.0
|
C3C
|
1:CLA610
|
4.4
|
60.0
|
1.0
|
C3A
|
1:CLA610
|
4.4
|
66.4
|
1.0
|
C2A
|
1:CLA610
|
4.5
|
61.8
|
1.0
|
CMD
|
1:CLA611
|
4.6
|
60.7
|
1.0
|
O5
|
1:LHG615
|
4.9
|
67.1
|
1.0
|
CBD
|
1:CLA610
|
4.9
|
60.2
|
1.0
|
|
Reference:
S.J.B.Chen,
J.H.Wu.
Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii-ST2) To Be Published.
Page generated: Fri Oct 4 12:05:19 2024
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