Magnesium in PDB 8j7a: Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
Enzymatic activity of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
All present enzymatic activity of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1):
1.97.1.12;
Other elements in 8j7a:
The structure of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
151;
Binding sites:
The binding sites of Magnesium atom in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
(pdb code 8j7a). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 151 binding sites of Magnesium where determined in the
Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1), PDB code: 8j7a:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 151 in 8j7a
Go back to
Magnesium Binding Sites List in 8j7a
Magnesium binding site 1 out
of 151 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg601
b:89.6
occ:1.00
|
MG
|
1:CHL601
|
0.0
|
89.6
|
1.0
|
NA
|
1:CHL601
|
2.0
|
86.9
|
1.0
|
ND
|
1:CHL601
|
2.0
|
82.5
|
1.0
|
NB
|
1:CHL601
|
2.0
|
87.0
|
1.0
|
NC
|
1:CHL601
|
2.1
|
90.5
|
1.0
|
O
|
1:TRP48
|
2.7
|
91.1
|
1.0
|
C12
|
1:LHG615
|
2.9
|
118.5
|
1.0
|
C4D
|
1:CHL601
|
2.9
|
82.0
|
1.0
|
C1A
|
1:CHL601
|
3.0
|
85.1
|
1.0
|
C4A
|
1:CHL601
|
3.0
|
89.5
|
1.0
|
C1B
|
1:CHL601
|
3.0
|
86.6
|
1.0
|
C1C
|
1:CHL601
|
3.1
|
87.6
|
1.0
|
C4B
|
1:CHL601
|
3.1
|
87.5
|
1.0
|
C4C
|
1:CHL601
|
3.1
|
85.2
|
1.0
|
C1D
|
1:CHL601
|
3.2
|
84.9
|
1.0
|
C11
|
1:LHG615
|
3.2
|
116.2
|
1.0
|
C13
|
1:LHG615
|
3.3
|
119.4
|
1.0
|
CHB
|
1:CHL601
|
3.3
|
90.2
|
1.0
|
CHC
|
1:CHL601
|
3.4
|
91.3
|
1.0
|
CHA
|
1:CHL601
|
3.4
|
83.9
|
1.0
|
CHD
|
1:CHL601
|
3.5
|
90.6
|
1.0
|
C
|
1:TRP48
|
3.9
|
86.5
|
1.0
|
C10
|
1:LHG615
|
4.0
|
122.2
|
1.0
|
C3D
|
1:CHL601
|
4.2
|
86.8
|
1.0
|
C2A
|
1:CHL601
|
4.3
|
85.1
|
1.0
|
C3A
|
1:CHL601
|
4.3
|
89.9
|
1.0
|
C3B
|
1:CHL601
|
4.4
|
87.2
|
1.0
|
C2C
|
1:CHL601
|
4.4
|
77.4
|
1.0
|
C2B
|
1:CHL601
|
4.4
|
85.4
|
1.0
|
C2D
|
1:CHL601
|
4.4
|
82.7
|
1.0
|
C3C
|
1:CHL601
|
4.4
|
74.4
|
1.0
|
CD1
|
1:TRP48
|
4.6
|
80.0
|
1.0
|
C14
|
1:LHG615
|
4.6
|
125.0
|
1.0
|
CA
|
1:TRP48
|
4.7
|
72.9
|
1.0
|
C9
|
1:LHG615
|
4.7
|
118.9
|
1.0
|
O
|
1:HIS47
|
4.7
|
107.4
|
1.0
|
N
|
1:MET49
|
4.8
|
98.8
|
1.0
|
CA
|
1:MET49
|
4.9
|
95.4
|
1.0
|
CBD
|
1:CHL601
|
4.9
|
89.3
|
1.0
|
CB
|
1:MET49
|
4.9
|
105.1
|
1.0
|
CAA
|
1:CHL601
|
5.0
|
85.2
|
1.0
|
|
Magnesium binding site 2 out
of 151 in 8j7a
Go back to
Magnesium Binding Sites List in 8j7a
Magnesium binding site 2 out
of 151 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg602
b:111.4
occ:1.00
|
MG
|
1:CLA602
|
0.0
|
111.4
|
1.0
|
NB
|
1:CLA602
|
2.0
|
81.4
|
1.0
|
ND
|
1:CLA602
|
2.0
|
94.0
|
1.0
|
NC
|
1:CLA602
|
2.1
|
87.5
|
1.0
|
NA
|
1:CLA602
|
2.1
|
85.1
|
1.0
|
OE2
|
1:GLU87
|
2.7
|
85.0
|
1.0
|
C4D
|
1:CLA602
|
2.9
|
86.6
|
1.0
|
C1B
|
1:CLA602
|
3.0
|
72.2
|
1.0
|
C4A
|
1:CLA602
|
3.0
|
76.3
|
1.0
|
C4B
|
1:CLA602
|
3.1
|
80.4
|
1.0
|
C1C
|
1:CLA602
|
3.1
|
88.7
|
1.0
|
C4C
|
1:CLA602
|
3.1
|
73.0
|
1.0
|
C38
|
1:XAT614
|
3.2
|
85.3
|
1.0
|
C1A
|
1:CLA602
|
3.2
|
80.9
|
1.0
|
C1D
|
1:CLA602
|
3.2
|
83.0
|
1.0
|
NH1
|
1:ARG196
|
3.3
|
73.5
|
1.0
|
CHB
|
1:CLA602
|
3.4
|
84.5
|
1.0
|
CHC
|
1:CLA602
|
3.4
|
86.5
|
1.0
|
CHA
|
1:CLA602
|
3.5
|
85.8
|
1.0
|
CHD
|
1:CLA602
|
3.5
|
76.7
|
1.0
|
CD
|
1:GLU87
|
3.8
|
83.2
|
1.0
|
C3D
|
1:CLA602
|
4.3
|
75.6
|
1.0
|
CG
|
1:GLU87
|
4.3
|
71.3
|
1.0
|
C25
|
1:XAT614
|
4.3
|
81.5
|
1.0
|
C2B
|
1:CLA602
|
4.3
|
69.1
|
1.0
|
C3B
|
1:CLA602
|
4.3
|
76.7
|
1.0
|
C2C
|
1:CLA602
|
4.3
|
75.7
|
1.0
|
C2D
|
1:CLA602
|
4.4
|
79.1
|
1.0
|
C3C
|
1:CLA602
|
4.4
|
68.6
|
1.0
|
C3A
|
1:CLA602
|
4.4
|
68.7
|
1.0
|
CZ
|
1:ARG196
|
4.4
|
84.4
|
1.0
|
C2A
|
1:CLA602
|
4.5
|
63.9
|
1.0
|
O24
|
1:XAT614
|
4.6
|
93.3
|
1.0
|
C27
|
1:XAT614
|
4.7
|
89.9
|
1.0
|
NH2
|
1:ARG196
|
4.8
|
90.4
|
1.0
|
C28
|
1:XAT614
|
4.8
|
86.4
|
1.0
|
OE1
|
1:GLU87
|
4.8
|
84.0
|
1.0
|
CBD
|
1:CLA602
|
4.9
|
79.5
|
1.0
|
CBA
|
1:CLA602
|
5.0
|
73.8
|
1.0
|
|
Magnesium binding site 3 out
of 151 in 8j7a
Go back to
Magnesium Binding Sites List in 8j7a
Magnesium binding site 3 out
of 151 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg603
b:104.3
occ:1.00
|
MG
|
1:CLA603
|
0.0
|
104.3
|
1.0
|
NB
|
1:CLA603
|
2.0
|
98.2
|
1.0
|
ND
|
1:CLA603
|
2.0
|
103.8
|
1.0
|
NA
|
1:CLA603
|
2.1
|
99.2
|
1.0
|
NC
|
1:CLA603
|
2.1
|
101.7
|
1.0
|
C4D
|
1:CLA603
|
2.9
|
95.3
|
1.0
|
C1B
|
1:CLA603
|
3.0
|
97.7
|
1.0
|
C4A
|
1:CLA603
|
3.0
|
102.6
|
1.0
|
C4B
|
1:CLA603
|
3.1
|
96.4
|
1.0
|
C1C
|
1:CLA603
|
3.1
|
99.4
|
1.0
|
C4C
|
1:CLA603
|
3.1
|
100.1
|
1.0
|
C1A
|
1:CLA603
|
3.2
|
101.8
|
1.0
|
C1D
|
1:CLA603
|
3.2
|
104.2
|
1.0
|
CE1
|
1:HIS90
|
3.3
|
83.3
|
1.0
|
CHB
|
1:CLA603
|
3.4
|
96.6
|
1.0
|
CHC
|
1:CLA603
|
3.4
|
100.1
|
1.0
|
CHA
|
1:CLA603
|
3.5
|
93.7
|
1.0
|
CHD
|
1:CLA603
|
3.5
|
102.3
|
1.0
|
NE2
|
1:HIS90
|
3.8
|
80.8
|
1.0
|
C3D
|
1:CLA603
|
4.3
|
96.9
|
1.0
|
C2B
|
1:CLA603
|
4.3
|
102.9
|
1.0
|
C3B
|
1:CLA603
|
4.3
|
95.5
|
1.0
|
C2C
|
1:CLA603
|
4.3
|
97.1
|
1.0
|
C2D
|
1:CLA603
|
4.4
|
101.4
|
1.0
|
C3C
|
1:CLA603
|
4.4
|
97.4
|
1.0
|
C3A
|
1:CLA603
|
4.4
|
110.3
|
1.0
|
ND1
|
1:HIS90
|
4.4
|
84.5
|
1.0
|
C2A
|
1:CLA603
|
4.5
|
106.8
|
1.0
|
CBD
|
1:CLA603
|
4.9
|
94.8
|
1.0
|
|
Magnesium binding site 4 out
of 151 in 8j7a
Go back to
Magnesium Binding Sites List in 8j7a
Magnesium binding site 4 out
of 151 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg604
b:160.8
occ:1.00
|
MG
|
1:CLA604
|
0.0
|
160.8
|
1.0
|
NB
|
1:CLA604
|
2.0
|
152.3
|
1.0
|
ND
|
1:CLA604
|
2.0
|
157.1
|
1.0
|
NC
|
1:CLA604
|
2.1
|
157.2
|
1.0
|
NA
|
1:CLA604
|
2.1
|
157.3
|
1.0
|
C4D
|
1:CLA604
|
2.9
|
152.2
|
1.0
|
C1B
|
1:CLA604
|
3.0
|
152.5
|
1.0
|
C4A
|
1:CLA604
|
3.0
|
153.9
|
1.0
|
C4B
|
1:CLA604
|
3.1
|
151.1
|
1.0
|
C1C
|
1:CLA604
|
3.1
|
155.9
|
1.0
|
C4C
|
1:CLA604
|
3.1
|
154.7
|
1.0
|
C1D
|
1:CLA604
|
3.2
|
156.1
|
1.0
|
C1A
|
1:CLA604
|
3.2
|
155.4
|
1.0
|
CHB
|
1:CLA604
|
3.4
|
152.2
|
1.0
|
CHC
|
1:CLA604
|
3.4
|
152.8
|
1.0
|
CHA
|
1:CLA604
|
3.5
|
151.3
|
1.0
|
CHD
|
1:CLA604
|
3.5
|
153.7
|
1.0
|
C2
|
1:CLA604
|
3.6
|
157.4
|
1.0
|
C3
|
1:CLA604
|
3.7
|
154.7
|
1.0
|
C1
|
1:CLA604
|
4.1
|
155.8
|
1.0
|
O
|
1:GLY100
|
4.2
|
129.4
|
1.0
|
C3D
|
1:CLA604
|
4.3
|
154.5
|
1.0
|
C2B
|
1:CLA604
|
4.3
|
153.1
|
1.0
|
C3B
|
1:CLA604
|
4.3
|
152.3
|
1.0
|
C4
|
1:CLA604
|
4.3
|
152.0
|
1.0
|
C2C
|
1:CLA604
|
4.3
|
152.9
|
1.0
|
C2D
|
1:CLA604
|
4.4
|
153.5
|
1.0
|
C3C
|
1:CLA604
|
4.4
|
151.1
|
1.0
|
C3A
|
1:CLA604
|
4.4
|
151.6
|
1.0
|
O1A
|
1:CLA604
|
4.5
|
147.0
|
1.0
|
C2A
|
1:CLA604
|
4.5
|
153.8
|
1.0
|
CA
|
1:GLY100
|
4.7
|
121.6
|
1.0
|
C4
|
1:XAT614
|
4.8
|
97.1
|
1.0
|
C
|
1:GLY100
|
4.8
|
124.3
|
1.0
|
CGA
|
1:CLA604
|
4.8
|
153.7
|
1.0
|
CBD
|
1:CLA604
|
4.9
|
153.0
|
1.0
|
|
Magnesium binding site 5 out
of 151 in 8j7a
Go back to
Magnesium Binding Sites List in 8j7a
Magnesium binding site 5 out
of 151 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg605
b:189.4
occ:1.00
|
MG
|
1:CLA605
|
0.0
|
189.4
|
1.0
|
NB
|
1:CLA605
|
2.0
|
184.0
|
1.0
|
ND
|
1:CLA605
|
2.0
|
184.8
|
1.0
|
NC
|
1:CLA605
|
2.1
|
179.0
|
1.0
|
NA
|
1:CLA605
|
2.1
|
181.6
|
1.0
|
C4D
|
1:CLA605
|
2.9
|
183.2
|
1.0
|
C1B
|
1:CLA605
|
3.0
|
182.4
|
1.0
|
C4A
|
1:CLA605
|
3.0
|
181.3
|
1.0
|
C4B
|
1:CLA605
|
3.1
|
180.5
|
1.0
|
C1C
|
1:CLA605
|
3.1
|
177.0
|
1.0
|
C4C
|
1:CLA605
|
3.2
|
178.0
|
1.0
|
C1D
|
1:CLA605
|
3.2
|
181.2
|
1.0
|
C1A
|
1:CLA605
|
3.2
|
181.3
|
1.0
|
CHB
|
1:CLA605
|
3.4
|
182.0
|
1.0
|
CHC
|
1:CLA605
|
3.4
|
176.5
|
1.0
|
CHA
|
1:CLA605
|
3.5
|
183.1
|
1.0
|
CHD
|
1:CLA605
|
3.5
|
178.7
|
1.0
|
OE2
|
1:GLU145
|
4.0
|
169.2
|
1.0
|
C3D
|
1:CLA605
|
4.3
|
183.2
|
1.0
|
C2B
|
1:CLA605
|
4.3
|
181.0
|
1.0
|
C3B
|
1:CLA605
|
4.3
|
180.7
|
1.0
|
C2C
|
1:CLA605
|
4.3
|
178.8
|
1.0
|
C2D
|
1:CLA605
|
4.4
|
180.8
|
1.0
|
C3C
|
1:CLA605
|
4.4
|
178.9
|
1.0
|
C3A
|
1:CLA605
|
4.4
|
180.1
|
1.0
|
C2A
|
1:CLA605
|
4.5
|
180.4
|
1.0
|
CD
|
1:GLU145
|
4.6
|
171.3
|
1.0
|
C1
|
1:CLA604
|
4.8
|
155.8
|
1.0
|
CHB
|
1:CLA604
|
4.8
|
152.2
|
1.0
|
OE1
|
1:GLU145
|
4.9
|
169.1
|
1.0
|
CMB
|
1:CLA604
|
4.9
|
153.2
|
1.0
|
C3A
|
1:CLA604
|
4.9
|
151.6
|
1.0
|
CBD
|
1:CLA605
|
5.0
|
184.3
|
1.0
|
|
Magnesium binding site 6 out
of 151 in 8j7a
Go back to
Magnesium Binding Sites List in 8j7a
Magnesium binding site 6 out
of 151 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg606
b:211.2
occ:1.00
|
MG
|
1:CHL606
|
0.0
|
211.2
|
1.0
|
NA
|
1:CHL606
|
2.0
|
210.4
|
1.0
|
ND
|
1:CHL606
|
2.0
|
209.4
|
1.0
|
NB
|
1:CHL606
|
2.0
|
210.3
|
1.0
|
NC
|
1:CHL606
|
2.0
|
208.4
|
1.0
|
C4D
|
1:CHL606
|
2.9
|
208.6
|
1.0
|
C4A
|
1:CHL606
|
2.9
|
209.5
|
1.0
|
C1A
|
1:CHL606
|
2.9
|
209.9
|
1.0
|
C1B
|
1:CHL606
|
3.0
|
207.9
|
1.0
|
C1C
|
1:CHL606
|
3.0
|
207.2
|
1.0
|
C4B
|
1:CHL606
|
3.1
|
209.7
|
1.0
|
C4C
|
1:CHL606
|
3.1
|
209.1
|
1.0
|
C1D
|
1:CHL606
|
3.1
|
209.8
|
1.0
|
CHB
|
1:CHL606
|
3.3
|
207.5
|
1.0
|
CHC
|
1:CHL606
|
3.4
|
208.6
|
1.0
|
CHA
|
1:CHL606
|
3.4
|
209.5
|
1.0
|
CHD
|
1:CHL606
|
3.5
|
210.6
|
1.0
|
C3D
|
1:CHL606
|
4.2
|
207.6
|
1.0
|
C2A
|
1:CHL606
|
4.2
|
209.0
|
1.0
|
C3A
|
1:CHL606
|
4.2
|
209.8
|
1.0
|
C3B
|
1:CHL606
|
4.3
|
207.7
|
1.0
|
C2C
|
1:CHL606
|
4.4
|
206.5
|
1.0
|
C2B
|
1:CHL606
|
4.4
|
207.5
|
1.0
|
C2D
|
1:CHL606
|
4.4
|
207.3
|
1.0
|
C3C
|
1:CHL606
|
4.4
|
207.5
|
1.0
|
CAA
|
1:CHL606
|
4.9
|
205.7
|
1.0
|
CBD
|
1:CHL606
|
4.9
|
209.0
|
1.0
|
|
Magnesium binding site 7 out
of 151 in 8j7a
Go back to
Magnesium Binding Sites List in 8j7a
Magnesium binding site 7 out
of 151 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg607
b:119.3
occ:1.00
|
MG
|
1:CLA607
|
0.0
|
119.3
|
1.0
|
NB
|
1:CLA607
|
2.0
|
115.1
|
1.0
|
ND
|
1:CLA607
|
2.0
|
113.2
|
1.0
|
NC
|
1:CLA607
|
2.1
|
117.0
|
1.0
|
NA
|
1:CLA607
|
2.1
|
112.5
|
1.0
|
C4D
|
1:CLA607
|
2.9
|
114.1
|
1.0
|
C1B
|
1:CLA607
|
3.0
|
113.9
|
1.0
|
C4A
|
1:CLA607
|
3.0
|
117.0
|
1.0
|
C4B
|
1:CLA607
|
3.1
|
116.5
|
1.0
|
C1C
|
1:CLA607
|
3.1
|
114.2
|
1.0
|
C4C
|
1:CLA607
|
3.1
|
114.5
|
1.0
|
C1D
|
1:CLA607
|
3.2
|
108.6
|
1.0
|
C1A
|
1:CLA607
|
3.2
|
111.4
|
1.0
|
CHB
|
1:CLA607
|
3.4
|
117.8
|
1.0
|
CHC
|
1:CLA607
|
3.4
|
115.1
|
1.0
|
CHA
|
1:CLA607
|
3.5
|
111.4
|
1.0
|
CZ
|
1:PHE172
|
3.5
|
124.0
|
1.0
|
CHD
|
1:CLA607
|
3.5
|
111.3
|
1.0
|
CE2
|
1:PHE172
|
3.9
|
121.6
|
1.0
|
CG2
|
1:VAL152
|
3.9
|
132.0
|
1.0
|
O2A
|
1:CLA607
|
4.3
|
117.2
|
1.0
|
C3D
|
1:CLA607
|
4.3
|
118.7
|
1.0
|
C2B
|
1:CLA607
|
4.3
|
112.7
|
1.0
|
C3B
|
1:CLA607
|
4.3
|
115.1
|
1.0
|
C2C
|
1:CLA607
|
4.3
|
113.4
|
1.0
|
C2D
|
1:CLA607
|
4.4
|
110.0
|
1.0
|
C3C
|
1:CLA607
|
4.4
|
113.8
|
1.0
|
C3A
|
1:CLA607
|
4.4
|
114.3
|
1.0
|
C2A
|
1:CLA607
|
4.5
|
113.0
|
1.0
|
CE1
|
1:PHE172
|
4.5
|
119.0
|
1.0
|
CBD
|
1:CLA607
|
4.9
|
108.8
|
1.0
|
|
Magnesium binding site 8 out
of 151 in 8j7a
Go back to
Magnesium Binding Sites List in 8j7a
Magnesium binding site 8 out
of 151 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg608
b:123.2
occ:1.00
|
MG
|
1:CLA608
|
0.0
|
123.2
|
1.0
|
NB
|
1:CLA608
|
2.0
|
117.2
|
1.0
|
ND
|
1:CLA608
|
2.0
|
117.0
|
1.0
|
NA
|
1:CLA608
|
2.1
|
121.6
|
1.0
|
NC
|
1:CLA608
|
2.1
|
124.4
|
1.0
|
C4D
|
1:CLA608
|
2.9
|
112.4
|
1.0
|
C1B
|
1:CLA608
|
3.0
|
122.8
|
1.0
|
C4A
|
1:CLA608
|
3.0
|
123.1
|
1.0
|
C4B
|
1:CLA608
|
3.1
|
113.6
|
1.0
|
C1C
|
1:CLA608
|
3.1
|
121.5
|
1.0
|
C4C
|
1:CLA608
|
3.1
|
125.2
|
1.0
|
C1D
|
1:CLA608
|
3.1
|
119.7
|
1.0
|
C1A
|
1:CLA608
|
3.2
|
121.3
|
1.0
|
OE1
|
1:GLU153
|
3.2
|
121.6
|
1.0
|
CHB
|
1:CLA608
|
3.4
|
126.8
|
1.0
|
CHC
|
1:CLA608
|
3.4
|
118.1
|
1.0
|
CHA
|
1:CLA608
|
3.5
|
118.0
|
1.0
|
CHD
|
1:CLA608
|
3.5
|
123.8
|
1.0
|
CMD
|
1:CLA603
|
4.0
|
102.0
|
1.0
|
CG
|
1:GLU153
|
4.0
|
129.7
|
1.0
|
CD
|
1:GLU153
|
4.0
|
125.7
|
1.0
|
C3D
|
1:CLA608
|
4.3
|
117.3
|
1.0
|
C2B
|
1:CLA608
|
4.3
|
117.5
|
1.0
|
C3B
|
1:CLA608
|
4.3
|
115.5
|
1.0
|
C2C
|
1:CLA608
|
4.3
|
121.1
|
1.0
|
C2D
|
1:CLA608
|
4.3
|
114.7
|
1.0
|
C3C
|
1:CLA608
|
4.4
|
118.8
|
1.0
|
C3A
|
1:CLA608
|
4.4
|
115.0
|
1.0
|
C2A
|
1:CLA608
|
4.5
|
120.9
|
1.0
|
CB
|
1:GLU153
|
4.6
|
128.8
|
1.0
|
CBD
|
1:CLA608
|
4.9
|
117.4
|
1.0
|
|
Magnesium binding site 9 out
of 151 in 8j7a
Go back to
Magnesium Binding Sites List in 8j7a
Magnesium binding site 9 out
of 151 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg609
b:104.0
occ:1.00
|
MG
|
1:CLA609
|
0.0
|
104.0
|
1.0
|
NB
|
1:CLA609
|
2.0
|
120.5
|
1.0
|
ND
|
1:CLA609
|
2.0
|
103.3
|
1.0
|
NC
|
1:CLA609
|
2.1
|
113.8
|
1.0
|
NA
|
1:CLA609
|
2.1
|
106.3
|
1.0
|
C4D
|
1:CLA609
|
2.9
|
110.3
|
1.0
|
C1B
|
1:CLA609
|
3.0
|
115.0
|
1.0
|
C4A
|
1:CLA609
|
3.0
|
106.5
|
1.0
|
C4B
|
1:CLA609
|
3.1
|
109.5
|
1.0
|
C1C
|
1:CLA609
|
3.1
|
116.5
|
1.0
|
C4C
|
1:CLA609
|
3.1
|
114.0
|
1.0
|
C1A
|
1:CLA609
|
3.2
|
107.7
|
1.0
|
C1D
|
1:CLA609
|
3.2
|
108.4
|
1.0
|
C18
|
1:LUT616
|
3.4
|
121.9
|
1.0
|
CHB
|
1:CLA609
|
3.4
|
102.7
|
1.0
|
CHC
|
1:CLA609
|
3.4
|
102.7
|
1.0
|
CHA
|
1:CLA609
|
3.5
|
110.6
|
1.0
|
CHD
|
1:CLA609
|
3.5
|
108.3
|
1.0
|
C3D
|
1:CLA609
|
4.3
|
111.7
|
1.0
|
C2B
|
1:CLA609
|
4.3
|
113.4
|
1.0
|
C3B
|
1:CLA609
|
4.3
|
114.3
|
1.0
|
C2C
|
1:CLA609
|
4.3
|
119.5
|
1.0
|
C2D
|
1:CLA609
|
4.3
|
114.4
|
1.0
|
C3C
|
1:CLA609
|
4.4
|
119.2
|
1.0
|
C3A
|
1:CLA609
|
4.4
|
112.1
|
1.0
|
C2A
|
1:CLA609
|
4.5
|
111.0
|
1.0
|
OE2
|
1:GLU191
|
4.5
|
100.8
|
1.0
|
C5
|
1:LUT616
|
4.7
|
118.3
|
1.0
|
NH2
|
1:ARG92
|
4.7
|
100.8
|
1.0
|
C4
|
1:LUT616
|
4.9
|
114.3
|
1.0
|
CBD
|
1:CLA609
|
4.9
|
113.3
|
1.0
|
NE
|
1:ARG92
|
5.0
|
88.0
|
1.0
|
|
Magnesium binding site 10 out
of 151 in 8j7a
Go back to
Magnesium Binding Sites List in 8j7a
Magnesium binding site 10 out
of 151 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg610
b:116.0
occ:1.00
|
MG
|
1:CLA610
|
0.0
|
116.0
|
1.0
|
NB
|
1:CLA610
|
2.0
|
122.3
|
1.0
|
ND
|
1:CLA610
|
2.0
|
116.0
|
1.0
|
NC
|
1:CLA610
|
2.1
|
110.6
|
1.0
|
NA
|
1:CLA610
|
2.1
|
120.3
|
1.0
|
O6
|
1:LHG615
|
2.8
|
113.9
|
1.0
|
C4D
|
1:CLA610
|
2.9
|
116.4
|
1.0
|
O4
|
1:LHG615
|
3.0
|
132.0
|
1.0
|
C1B
|
1:CLA610
|
3.0
|
119.1
|
1.0
|
C4A
|
1:CLA610
|
3.0
|
116.6
|
1.0
|
C4B
|
1:CLA610
|
3.1
|
120.0
|
1.0
|
C1C
|
1:CLA610
|
3.1
|
114.9
|
1.0
|
C4C
|
1:CLA610
|
3.1
|
110.0
|
1.0
|
C1A
|
1:CLA610
|
3.2
|
117.3
|
1.0
|
C1D
|
1:CLA610
|
3.2
|
113.3
|
1.0
|
P
|
1:LHG615
|
3.2
|
131.7
|
1.0
|
O3
|
1:LHG615
|
3.3
|
121.5
|
1.0
|
CHB
|
1:CLA610
|
3.4
|
113.2
|
1.0
|
CHC
|
1:CLA610
|
3.4
|
114.6
|
1.0
|
CHA
|
1:CLA610
|
3.5
|
115.0
|
1.0
|
CHD
|
1:CLA610
|
3.5
|
111.7
|
1.0
|
C4
|
1:LHG615
|
4.1
|
118.2
|
1.0
|
C3D
|
1:CLA610
|
4.3
|
112.2
|
1.0
|
C2B
|
1:CLA610
|
4.3
|
118.9
|
1.0
|
C3B
|
1:CLA610
|
4.3
|
121.6
|
1.0
|
C2C
|
1:CLA610
|
4.3
|
115.8
|
1.0
|
C2D
|
1:CLA610
|
4.4
|
111.1
|
1.0
|
C3C
|
1:CLA610
|
4.4
|
112.8
|
1.0
|
C3A
|
1:CLA610
|
4.4
|
115.1
|
1.0
|
C2A
|
1:CLA610
|
4.5
|
115.6
|
1.0
|
C3
|
1:LHG615
|
4.5
|
119.3
|
1.0
|
C5
|
1:LHG615
|
4.6
|
119.8
|
1.0
|
O5
|
1:LHG615
|
4.7
|
120.5
|
1.0
|
CMD
|
1:CLA611
|
4.7
|
126.8
|
1.0
|
CBD
|
1:CLA610
|
4.9
|
114.3
|
1.0
|
C2
|
1:LHG615
|
5.0
|
117.1
|
1.0
|
|
Reference:
S.J.B.Chen,
J.H.Wu.
Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii-ST2) To Be Published.
Page generated: Fri Oct 4 12:05:21 2024
|