Magnesium in PDB 8j7b: Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
Enzymatic activity of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
All present enzymatic activity of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2):
1.97.1.12;
Other elements in 8j7b:
The structure of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
154;
Binding sites:
The binding sites of Magnesium atom in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
(pdb code 8j7b). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 154 binding sites of Magnesium where determined in the
Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2), PDB code: 8j7b:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 154 in 8j7b
Go back to
Magnesium Binding Sites List in 8j7b
Magnesium binding site 1 out
of 154 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg601
b:39.8
occ:1.00
|
MG
|
1:CHL601
|
0.0
|
39.8
|
1.0
|
NA
|
1:CHL601
|
2.0
|
42.7
|
1.0
|
ND
|
1:CHL601
|
2.0
|
30.6
|
1.0
|
NB
|
1:CHL601
|
2.0
|
44.6
|
1.0
|
NC
|
1:CHL601
|
2.1
|
47.1
|
1.0
|
O
|
1:TRP48
|
2.5
|
46.4
|
1.0
|
C11
|
1:LHG615
|
2.8
|
54.8
|
1.0
|
C4D
|
1:CHL601
|
2.9
|
31.8
|
1.0
|
C4A
|
1:CHL601
|
3.0
|
39.9
|
1.0
|
C1A
|
1:CHL601
|
3.0
|
40.7
|
1.0
|
C1B
|
1:CHL601
|
3.1
|
39.5
|
1.0
|
C1C
|
1:CHL601
|
3.1
|
43.8
|
1.0
|
C4B
|
1:CHL601
|
3.1
|
41.0
|
1.0
|
C4C
|
1:CHL601
|
3.1
|
39.9
|
1.0
|
C1D
|
1:CHL601
|
3.2
|
41.9
|
1.0
|
CHB
|
1:CHL601
|
3.3
|
41.0
|
1.0
|
C12
|
1:LHG615
|
3.3
|
59.8
|
1.0
|
CHC
|
1:CHL601
|
3.4
|
38.6
|
1.0
|
C13
|
1:LHG615
|
3.4
|
65.0
|
1.0
|
CHA
|
1:CHL601
|
3.4
|
37.7
|
1.0
|
CHD
|
1:CHL601
|
3.5
|
44.6
|
1.0
|
C
|
1:TRP48
|
3.7
|
41.8
|
1.0
|
C3D
|
1:CHL601
|
4.2
|
31.5
|
1.0
|
C10
|
1:LHG615
|
4.2
|
56.0
|
1.0
|
C2A
|
1:CHL601
|
4.3
|
34.6
|
1.0
|
C3A
|
1:CHL601
|
4.3
|
37.2
|
1.0
|
CA
|
1:TRP48
|
4.3
|
34.6
|
1.0
|
C3B
|
1:CHL601
|
4.4
|
36.4
|
1.0
|
C2C
|
1:CHL601
|
4.4
|
37.8
|
1.0
|
C2B
|
1:CHL601
|
4.4
|
41.0
|
1.0
|
C2D
|
1:CHL601
|
4.4
|
39.2
|
1.0
|
C3C
|
1:CHL601
|
4.4
|
32.9
|
1.0
|
C9
|
1:LHG615
|
4.5
|
52.6
|
1.0
|
C14
|
1:LHG615
|
4.5
|
64.3
|
1.0
|
N
|
1:MET49
|
4.7
|
34.9
|
1.0
|
CB
|
1:TRP48
|
4.8
|
25.5
|
1.0
|
CBD
|
1:CHL601
|
4.9
|
38.9
|
1.0
|
CA
|
1:MET49
|
5.0
|
25.1
|
1.0
|
|
Magnesium binding site 2 out
of 154 in 8j7b
Go back to
Magnesium Binding Sites List in 8j7b
Magnesium binding site 2 out
of 154 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg602
b:50.7
occ:1.00
|
MG
|
1:CLA602
|
0.0
|
50.7
|
1.0
|
NB
|
1:CLA602
|
2.0
|
34.1
|
1.0
|
ND
|
1:CLA602
|
2.0
|
26.6
|
1.0
|
NC
|
1:CLA602
|
2.1
|
41.0
|
1.0
|
NA
|
1:CLA602
|
2.1
|
37.8
|
1.0
|
OE2
|
1:GLU87
|
2.7
|
25.6
|
1.0
|
C38
|
1:XAT614
|
2.9
|
32.4
|
1.0
|
C4D
|
1:CLA602
|
2.9
|
28.8
|
1.0
|
C1B
|
1:CLA602
|
3.0
|
32.0
|
1.0
|
C4A
|
1:CLA602
|
3.0
|
27.5
|
1.0
|
C4B
|
1:CLA602
|
3.1
|
34.2
|
1.0
|
C1C
|
1:CLA602
|
3.1
|
36.6
|
1.0
|
C4C
|
1:CLA602
|
3.1
|
33.0
|
1.0
|
C1A
|
1:CLA602
|
3.2
|
38.7
|
1.0
|
C1D
|
1:CLA602
|
3.2
|
32.6
|
1.0
|
CHB
|
1:CLA602
|
3.4
|
35.0
|
1.0
|
CHC
|
1:CLA602
|
3.4
|
39.3
|
1.0
|
CHA
|
1:CLA602
|
3.5
|
36.0
|
1.0
|
CHD
|
1:CLA602
|
3.5
|
30.8
|
1.0
|
C25
|
1:XAT614
|
3.6
|
38.4
|
1.0
|
CD
|
1:GLU87
|
3.7
|
37.1
|
1.0
|
O24
|
1:XAT614
|
3.8
|
50.5
|
1.0
|
C3D
|
1:CLA602
|
4.3
|
29.7
|
1.0
|
C2B
|
1:CLA602
|
4.3
|
29.8
|
1.0
|
C3B
|
1:CLA602
|
4.3
|
25.1
|
1.0
|
NE
|
1:ARG196
|
4.3
|
33.6
|
1.0
|
C2C
|
1:CLA602
|
4.3
|
29.5
|
1.0
|
C2D
|
1:CLA602
|
4.4
|
34.1
|
1.0
|
C3C
|
1:CLA602
|
4.4
|
30.9
|
1.0
|
NH2
|
1:ARG196
|
4.4
|
36.5
|
1.0
|
C3A
|
1:CLA602
|
4.4
|
23.1
|
1.0
|
CG
|
1:GLU87
|
4.4
|
24.8
|
1.0
|
C2A
|
1:CLA602
|
4.5
|
21.5
|
1.0
|
C27
|
1:XAT614
|
4.5
|
47.7
|
1.0
|
C26
|
1:XAT614
|
4.5
|
44.7
|
1.0
|
OE1
|
1:GLU87
|
4.5
|
40.5
|
1.0
|
C24
|
1:XAT614
|
4.6
|
40.0
|
1.0
|
CZ
|
1:ARG196
|
4.8
|
43.0
|
1.0
|
C28
|
1:XAT614
|
4.9
|
47.3
|
1.0
|
CBD
|
1:CLA602
|
4.9
|
24.8
|
1.0
|
|
Magnesium binding site 3 out
of 154 in 8j7b
Go back to
Magnesium Binding Sites List in 8j7b
Magnesium binding site 3 out
of 154 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg603
b:53.2
occ:1.00
|
MG
|
1:CLA603
|
0.0
|
53.2
|
1.0
|
NB
|
1:CLA603
|
2.0
|
45.3
|
1.0
|
ND
|
1:CLA603
|
2.0
|
45.0
|
1.0
|
NC
|
1:CLA603
|
2.1
|
46.6
|
1.0
|
NA
|
1:CLA603
|
2.1
|
48.0
|
1.0
|
C4D
|
1:CLA603
|
2.9
|
37.9
|
1.0
|
C1B
|
1:CLA603
|
3.0
|
38.0
|
1.0
|
C4A
|
1:CLA603
|
3.0
|
40.0
|
1.0
|
C4B
|
1:CLA603
|
3.1
|
49.9
|
1.0
|
C1C
|
1:CLA603
|
3.1
|
46.2
|
1.0
|
NE2
|
1:HIS90
|
3.1
|
16.1
|
1.0
|
C4C
|
1:CLA603
|
3.1
|
45.3
|
1.0
|
C1A
|
1:CLA603
|
3.2
|
41.9
|
1.0
|
C1D
|
1:CLA603
|
3.2
|
47.1
|
1.0
|
CHB
|
1:CLA603
|
3.4
|
34.8
|
1.0
|
CHC
|
1:CLA603
|
3.4
|
40.2
|
1.0
|
CHA
|
1:CLA603
|
3.5
|
38.1
|
1.0
|
CHD
|
1:CLA603
|
3.5
|
45.6
|
1.0
|
CE1
|
1:HIS90
|
3.9
|
19.2
|
1.0
|
CD2
|
1:HIS90
|
4.2
|
15.1
|
1.0
|
C3D
|
1:CLA603
|
4.3
|
41.0
|
1.0
|
C2B
|
1:CLA603
|
4.3
|
47.8
|
1.0
|
C3B
|
1:CLA603
|
4.3
|
50.0
|
1.0
|
C2C
|
1:CLA603
|
4.3
|
46.8
|
1.0
|
C2D
|
1:CLA603
|
4.4
|
41.6
|
1.0
|
C3C
|
1:CLA603
|
4.4
|
46.5
|
1.0
|
C3A
|
1:CLA603
|
4.4
|
43.4
|
1.0
|
C2A
|
1:CLA603
|
4.5
|
40.3
|
1.0
|
CBD
|
1:CLA603
|
4.9
|
43.0
|
1.0
|
|
Magnesium binding site 4 out
of 154 in 8j7b
Go back to
Magnesium Binding Sites List in 8j7b
Magnesium binding site 4 out
of 154 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg604
b:101.4
occ:1.00
|
MG
|
1:CLA604
|
0.0
|
101.4
|
1.0
|
NB
|
1:CLA604
|
2.0
|
99.1
|
1.0
|
ND
|
1:CLA604
|
2.0
|
99.4
|
1.0
|
NC
|
1:CLA604
|
2.1
|
96.2
|
1.0
|
NA
|
1:CLA604
|
2.1
|
96.9
|
1.0
|
C4D
|
1:CLA604
|
2.9
|
97.4
|
1.0
|
C1B
|
1:CLA604
|
3.0
|
94.8
|
1.0
|
C4A
|
1:CLA604
|
3.0
|
97.3
|
1.0
|
C4B
|
1:CLA604
|
3.1
|
97.5
|
1.0
|
C1C
|
1:CLA604
|
3.1
|
95.3
|
1.0
|
C4C
|
1:CLA604
|
3.1
|
91.6
|
1.0
|
C1D
|
1:CLA604
|
3.2
|
97.9
|
1.0
|
C1A
|
1:CLA604
|
3.2
|
94.6
|
1.0
|
CHB
|
1:CLA604
|
3.4
|
93.4
|
1.0
|
CHC
|
1:CLA604
|
3.4
|
96.7
|
1.0
|
CHA
|
1:CLA604
|
3.5
|
93.8
|
1.0
|
CHD
|
1:CLA604
|
3.5
|
93.1
|
1.0
|
O1A
|
1:CLA604
|
3.7
|
101.1
|
1.0
|
C4
|
1:XAT614
|
3.8
|
52.5
|
1.0
|
O3
|
1:XAT614
|
4.2
|
62.5
|
1.0
|
C4
|
1:CLA604
|
4.2
|
90.8
|
1.0
|
C3D
|
1:CLA604
|
4.3
|
98.2
|
1.0
|
C2B
|
1:CLA604
|
4.3
|
93.4
|
1.0
|
C3B
|
1:CLA604
|
4.3
|
95.1
|
1.0
|
C2C
|
1:CLA604
|
4.3
|
93.9
|
1.0
|
C2D
|
1:CLA604
|
4.4
|
97.7
|
1.0
|
C3C
|
1:CLA604
|
4.4
|
93.4
|
1.0
|
C3A
|
1:CLA604
|
4.4
|
97.4
|
1.0
|
C2A
|
1:CLA604
|
4.5
|
96.0
|
1.0
|
CGA
|
1:CLA604
|
4.5
|
101.8
|
1.0
|
O
|
1:GLY100
|
4.5
|
75.1
|
1.0
|
C3
|
1:XAT614
|
4.6
|
52.3
|
1.0
|
CA
|
1:GLY100
|
4.7
|
71.8
|
1.0
|
C1
|
1:CLA604
|
4.7
|
100.4
|
1.0
|
C5
|
1:XAT614
|
4.9
|
50.6
|
1.0
|
C18
|
1:XAT614
|
4.9
|
51.9
|
1.0
|
CBD
|
1:CLA604
|
4.9
|
96.0
|
1.0
|
|
Magnesium binding site 5 out
of 154 in 8j7b
Go back to
Magnesium Binding Sites List in 8j7b
Magnesium binding site 5 out
of 154 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg605
b:110.1
occ:1.00
|
MG
|
1:CLA605
|
0.0
|
110.1
|
1.0
|
NB
|
1:CLA605
|
2.0
|
112.9
|
1.0
|
ND
|
1:CLA605
|
2.0
|
109.9
|
1.0
|
NC
|
1:CLA605
|
2.1
|
108.1
|
1.0
|
NA
|
1:CLA605
|
2.1
|
112.2
|
1.0
|
C4D
|
1:CLA605
|
2.9
|
109.4
|
1.0
|
C1B
|
1:CLA605
|
3.0
|
110.4
|
1.0
|
C4A
|
1:CLA605
|
3.0
|
111.3
|
1.0
|
C4B
|
1:CLA605
|
3.1
|
110.1
|
1.0
|
C1C
|
1:CLA605
|
3.1
|
108.5
|
1.0
|
C4C
|
1:CLA605
|
3.1
|
109.1
|
1.0
|
C1A
|
1:CLA605
|
3.2
|
110.7
|
1.0
|
C1D
|
1:CLA605
|
3.2
|
112.6
|
1.0
|
CHB
|
1:CLA605
|
3.4
|
108.7
|
1.0
|
CHC
|
1:CLA605
|
3.4
|
108.5
|
1.0
|
CHA
|
1:CLA605
|
3.5
|
110.2
|
1.0
|
CHD
|
1:CLA605
|
3.5
|
110.4
|
1.0
|
C3D
|
1:CLA605
|
4.3
|
112.0
|
1.0
|
C2B
|
1:CLA605
|
4.3
|
109.2
|
1.0
|
C3B
|
1:CLA605
|
4.3
|
108.9
|
1.0
|
C2C
|
1:CLA605
|
4.3
|
112.2
|
1.0
|
C2D
|
1:CLA605
|
4.4
|
113.1
|
1.0
|
C3C
|
1:CLA605
|
4.4
|
110.9
|
1.0
|
C3A
|
1:CLA605
|
4.4
|
109.2
|
1.0
|
C2A
|
1:CLA605
|
4.5
|
111.0
|
1.0
|
OE1
|
1:GLU145
|
4.5
|
105.2
|
1.0
|
C1
|
1:CLA604
|
4.6
|
100.4
|
1.0
|
CD
|
1:GLU145
|
4.7
|
104.0
|
1.0
|
CBD
|
1:CLA605
|
4.9
|
113.5
|
1.0
|
|
Magnesium binding site 6 out
of 154 in 8j7b
Go back to
Magnesium Binding Sites List in 8j7b
Magnesium binding site 6 out
of 154 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg606
b:129.2
occ:1.00
|
MG
|
1:CHL606
|
0.0
|
129.2
|
1.0
|
NA
|
1:CHL606
|
2.0
|
128.0
|
1.0
|
ND
|
1:CHL606
|
2.0
|
130.7
|
1.0
|
NB
|
1:CHL606
|
2.0
|
129.9
|
1.0
|
NC
|
1:CHL606
|
2.1
|
126.8
|
1.0
|
C4D
|
1:CHL606
|
2.9
|
130.6
|
1.0
|
C4A
|
1:CHL606
|
2.9
|
127.5
|
1.0
|
C1A
|
1:CHL606
|
3.0
|
129.4
|
1.0
|
C1B
|
1:CHL606
|
3.0
|
128.3
|
1.0
|
C1C
|
1:CHL606
|
3.0
|
126.5
|
1.0
|
C4B
|
1:CHL606
|
3.1
|
131.2
|
1.0
|
C4C
|
1:CHL606
|
3.1
|
128.2
|
1.0
|
C1D
|
1:CHL606
|
3.2
|
128.5
|
1.0
|
OE1
|
1:GLN116
|
3.2
|
111.3
|
1.0
|
CHB
|
1:CHL606
|
3.3
|
127.9
|
1.0
|
CHC
|
1:CHL606
|
3.4
|
129.8
|
1.0
|
CHA
|
1:CHL606
|
3.4
|
128.7
|
1.0
|
CHD
|
1:CHL606
|
3.5
|
128.8
|
1.0
|
CD
|
1:GLN116
|
3.8
|
113.1
|
1.0
|
NE2
|
1:GLN116
|
4.2
|
112.2
|
1.0
|
C3D
|
1:CHL606
|
4.2
|
131.3
|
1.0
|
C2A
|
1:CHL606
|
4.2
|
130.7
|
1.0
|
C3A
|
1:CHL606
|
4.2
|
128.4
|
1.0
|
C3B
|
1:CHL606
|
4.4
|
129.7
|
1.0
|
C2C
|
1:CHL606
|
4.4
|
128.2
|
1.0
|
C2B
|
1:CHL606
|
4.4
|
128.3
|
1.0
|
C2D
|
1:CHL606
|
4.4
|
126.0
|
1.0
|
C3C
|
1:CHL606
|
4.4
|
129.3
|
1.0
|
CB
|
1:GLN116
|
4.7
|
113.2
|
1.0
|
CG
|
1:GLN116
|
4.8
|
115.2
|
1.0
|
CBD
|
1:CHL606
|
4.9
|
126.6
|
1.0
|
CAA
|
1:CHL606
|
4.9
|
129.9
|
1.0
|
|
Magnesium binding site 7 out
of 154 in 8j7b
Go back to
Magnesium Binding Sites List in 8j7b
Magnesium binding site 7 out
of 154 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg607
b:59.3
occ:1.00
|
MG
|
1:CLA607
|
0.0
|
59.3
|
1.0
|
NB
|
1:CLA607
|
2.0
|
60.0
|
1.0
|
ND
|
1:CLA607
|
2.0
|
62.9
|
1.0
|
NA
|
1:CLA607
|
2.1
|
56.3
|
1.0
|
NC
|
1:CLA607
|
2.1
|
54.7
|
1.0
|
C4D
|
1:CLA607
|
2.9
|
53.7
|
1.0
|
C1B
|
1:CLA607
|
3.0
|
57.4
|
1.0
|
C4A
|
1:CLA607
|
3.0
|
54.0
|
1.0
|
C4B
|
1:CLA607
|
3.1
|
55.8
|
1.0
|
C1C
|
1:CLA607
|
3.1
|
57.1
|
1.0
|
C4C
|
1:CLA607
|
3.1
|
55.7
|
1.0
|
C1A
|
1:CLA607
|
3.2
|
59.2
|
1.0
|
C1D
|
1:CLA607
|
3.2
|
58.8
|
1.0
|
CHB
|
1:CLA607
|
3.4
|
54.2
|
1.0
|
CHC
|
1:CLA607
|
3.4
|
55.0
|
1.0
|
CHA
|
1:CLA607
|
3.5
|
53.6
|
1.0
|
CHD
|
1:CLA607
|
3.5
|
54.8
|
1.0
|
CE1
|
1:PHE172
|
3.7
|
68.2
|
1.0
|
CZ
|
1:PHE172
|
3.8
|
67.4
|
1.0
|
C3D
|
1:CLA607
|
4.3
|
53.5
|
1.0
|
C2B
|
1:CLA607
|
4.3
|
53.2
|
1.0
|
C3B
|
1:CLA607
|
4.3
|
53.9
|
1.0
|
C2C
|
1:CLA607
|
4.3
|
56.8
|
1.0
|
C2D
|
1:CLA607
|
4.4
|
49.7
|
1.0
|
C3C
|
1:CLA607
|
4.4
|
56.5
|
1.0
|
O2A
|
1:CLA607
|
4.4
|
59.8
|
1.0
|
C3A
|
1:CLA607
|
4.4
|
51.4
|
1.0
|
C2A
|
1:CLA607
|
4.5
|
57.8
|
1.0
|
CD1
|
1:PHE172
|
4.7
|
66.7
|
1.0
|
CE2
|
1:PHE172
|
4.8
|
66.2
|
1.0
|
CBD
|
1:CLA607
|
4.9
|
50.6
|
1.0
|
|
Magnesium binding site 8 out
of 154 in 8j7b
Go back to
Magnesium Binding Sites List in 8j7b
Magnesium binding site 8 out
of 154 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg608
b:60.5
occ:1.00
|
MG
|
1:CLA608
|
0.0
|
60.5
|
1.0
|
NB
|
1:CLA608
|
2.0
|
56.3
|
1.0
|
ND
|
1:CLA608
|
2.0
|
53.0
|
1.0
|
NA
|
1:CLA608
|
2.1
|
52.2
|
1.0
|
NC
|
1:CLA608
|
2.1
|
51.0
|
1.0
|
OE1
|
1:GLU153
|
2.7
|
64.2
|
1.0
|
C4D
|
1:CLA608
|
2.9
|
49.5
|
1.0
|
C1B
|
1:CLA608
|
3.0
|
48.8
|
1.0
|
C4A
|
1:CLA608
|
3.0
|
54.0
|
1.0
|
C4B
|
1:CLA608
|
3.1
|
51.8
|
1.0
|
C1C
|
1:CLA608
|
3.1
|
52.2
|
1.0
|
C4C
|
1:CLA608
|
3.1
|
50.9
|
1.0
|
C1D
|
1:CLA608
|
3.2
|
50.6
|
1.0
|
C1A
|
1:CLA608
|
3.2
|
48.4
|
1.0
|
CHB
|
1:CLA608
|
3.4
|
47.6
|
1.0
|
CHC
|
1:CLA608
|
3.4
|
50.8
|
1.0
|
CHA
|
1:CLA608
|
3.5
|
51.1
|
1.0
|
CD
|
1:GLU153
|
3.5
|
61.4
|
1.0
|
CHD
|
1:CLA608
|
3.5
|
57.1
|
1.0
|
CMD
|
1:CLA603
|
4.0
|
43.4
|
1.0
|
OE2
|
1:GLU153
|
4.2
|
64.6
|
1.0
|
C3D
|
1:CLA608
|
4.3
|
45.7
|
1.0
|
C2B
|
1:CLA608
|
4.3
|
51.8
|
1.0
|
CG
|
1:GLU153
|
4.3
|
51.3
|
1.0
|
C3B
|
1:CLA608
|
4.3
|
53.4
|
1.0
|
C2C
|
1:CLA608
|
4.3
|
53.8
|
1.0
|
C2D
|
1:CLA608
|
4.4
|
43.8
|
1.0
|
C3C
|
1:CLA608
|
4.4
|
48.2
|
1.0
|
C3A
|
1:CLA608
|
4.4
|
54.8
|
1.0
|
C2A
|
1:CLA608
|
4.5
|
47.3
|
1.0
|
NH2
|
1:ARG156
|
4.7
|
55.9
|
1.0
|
CB
|
1:GLU153
|
4.8
|
52.7
|
1.0
|
C15
|
B:LHG852
|
4.9
|
89.3
|
1.0
|
CBD
|
1:CLA608
|
4.9
|
46.7
|
1.0
|
|
Magnesium binding site 9 out
of 154 in 8j7b
Go back to
Magnesium Binding Sites List in 8j7b
Magnesium binding site 9 out
of 154 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg609
b:71.2
occ:1.00
|
MG
|
1:CLA609
|
0.0
|
71.2
|
1.0
|
NB
|
1:CLA609
|
2.0
|
67.4
|
1.0
|
ND
|
1:CLA609
|
2.0
|
62.1
|
1.0
|
NC
|
1:CLA609
|
2.1
|
56.5
|
1.0
|
NA
|
1:CLA609
|
2.1
|
58.5
|
1.0
|
C4D
|
1:CLA609
|
2.9
|
65.1
|
1.0
|
C1B
|
1:CLA609
|
3.0
|
64.0
|
1.0
|
C4A
|
1:CLA609
|
3.0
|
58.4
|
1.0
|
C4B
|
1:CLA609
|
3.1
|
60.3
|
1.0
|
C1C
|
1:CLA609
|
3.1
|
62.4
|
1.0
|
C4C
|
1:CLA609
|
3.1
|
61.4
|
1.0
|
C1D
|
1:CLA609
|
3.2
|
55.4
|
1.0
|
C1A
|
1:CLA609
|
3.2
|
54.5
|
1.0
|
C18
|
1:LUT616
|
3.4
|
49.8
|
1.0
|
CHB
|
1:CLA609
|
3.4
|
59.1
|
1.0
|
CHC
|
1:CLA609
|
3.4
|
54.1
|
1.0
|
CHA
|
1:CLA609
|
3.5
|
63.8
|
1.0
|
CHD
|
1:CLA609
|
3.5
|
54.0
|
1.0
|
OE2
|
1:GLU191
|
4.0
|
62.7
|
1.0
|
C3D
|
1:CLA609
|
4.3
|
61.4
|
1.0
|
C2B
|
1:CLA609
|
4.3
|
59.8
|
1.0
|
C3B
|
1:CLA609
|
4.3
|
63.4
|
1.0
|
NH2
|
1:ARG92
|
4.3
|
51.9
|
1.0
|
C2C
|
1:CLA609
|
4.3
|
73.2
|
1.0
|
C2D
|
1:CLA609
|
4.4
|
62.4
|
1.0
|
C3C
|
1:CLA609
|
4.4
|
74.8
|
1.0
|
C3A
|
1:CLA609
|
4.4
|
61.0
|
1.0
|
C2A
|
1:CLA609
|
4.5
|
59.5
|
1.0
|
C5
|
1:LUT616
|
4.5
|
51.7
|
1.0
|
NE
|
1:ARG92
|
4.6
|
38.0
|
1.0
|
C4
|
1:LUT616
|
4.6
|
57.8
|
1.0
|
CD
|
1:GLU191
|
4.7
|
60.8
|
1.0
|
CZ
|
1:ARG92
|
4.8
|
39.1
|
1.0
|
CBD
|
1:CLA609
|
4.9
|
67.1
|
1.0
|
|
Magnesium binding site 10 out
of 154 in 8j7b
Go back to
Magnesium Binding Sites List in 8j7b
Magnesium binding site 10 out
of 154 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg610
b:67.2
occ:1.00
|
MG
|
1:CLA610
|
0.0
|
67.2
|
1.0
|
NB
|
1:CLA610
|
2.0
|
63.7
|
1.0
|
ND
|
1:CLA610
|
2.0
|
66.5
|
1.0
|
NA
|
1:CLA610
|
2.1
|
68.8
|
1.0
|
NC
|
1:CLA610
|
2.1
|
65.0
|
1.0
|
O4
|
1:LHG615
|
2.9
|
67.4
|
1.0
|
O3
|
1:LHG615
|
2.9
|
66.1
|
1.0
|
C4D
|
1:CLA610
|
2.9
|
67.4
|
1.0
|
C1B
|
1:CLA610
|
3.0
|
66.5
|
1.0
|
C4A
|
1:CLA610
|
3.0
|
67.0
|
1.0
|
C4B
|
1:CLA610
|
3.1
|
70.9
|
1.0
|
C1C
|
1:CLA610
|
3.1
|
65.2
|
1.0
|
C4C
|
1:CLA610
|
3.1
|
66.9
|
1.0
|
C1A
|
1:CLA610
|
3.2
|
66.6
|
1.0
|
C1D
|
1:CLA610
|
3.2
|
65.1
|
1.0
|
P
|
1:LHG615
|
3.3
|
72.1
|
1.0
|
O6
|
1:LHG615
|
3.4
|
61.2
|
1.0
|
CHB
|
1:CLA610
|
3.4
|
66.5
|
1.0
|
CHC
|
1:CLA610
|
3.4
|
69.0
|
1.0
|
CHA
|
1:CLA610
|
3.5
|
68.9
|
1.0
|
CHD
|
1:CLA610
|
3.5
|
65.6
|
1.0
|
O2
|
1:LHG615
|
3.8
|
70.2
|
1.0
|
C3
|
1:LHG615
|
4.1
|
67.4
|
1.0
|
C3D
|
1:CLA610
|
4.3
|
65.9
|
1.0
|
C2B
|
1:CLA610
|
4.3
|
67.7
|
1.0
|
C3B
|
1:CLA610
|
4.3
|
73.8
|
1.0
|
C2C
|
1:CLA610
|
4.3
|
67.3
|
1.0
|
C2D
|
1:CLA610
|
4.4
|
65.2
|
1.0
|
C3C
|
1:CLA610
|
4.4
|
64.0
|
1.0
|
C3A
|
1:CLA610
|
4.4
|
67.2
|
1.0
|
C2A
|
1:CLA610
|
4.5
|
63.6
|
1.0
|
CMD
|
1:CLA611
|
4.5
|
65.7
|
1.0
|
C2
|
1:LHG615
|
4.6
|
63.5
|
1.0
|
C4
|
1:LHG615
|
4.7
|
59.6
|
1.0
|
O5
|
1:LHG615
|
4.8
|
61.8
|
1.0
|
CBD
|
1:CLA610
|
4.9
|
65.5
|
1.0
|
|
Reference:
S.J.B.Chen,
J.H.Wu,
S.F.Sui,
L.X.Zhang.
Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii-ST2) To Be Published.
Page generated: Fri Oct 4 12:05:25 2024
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