Magnesium in PDB 8jh4: Rna Polymerase II Elongation Complex Containing 60 Bp Upstream Dna Loop, Stalled at Shl(-1) of the Nucleosome

Enzymatic activity of Rna Polymerase II Elongation Complex Containing 60 Bp Upstream Dna Loop, Stalled at Shl(-1) of the Nucleosome

All present enzymatic activity of Rna Polymerase II Elongation Complex Containing 60 Bp Upstream Dna Loop, Stalled at Shl(-1) of the Nucleosome:
2.7.7.6;

Other elements in 8jh4:

The structure of Rna Polymerase II Elongation Complex Containing 60 Bp Upstream Dna Loop, Stalled at Shl(-1) of the Nucleosome also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rna Polymerase II Elongation Complex Containing 60 Bp Upstream Dna Loop, Stalled at Shl(-1) of the Nucleosome (pdb code 8jh4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rna Polymerase II Elongation Complex Containing 60 Bp Upstream Dna Loop, Stalled at Shl(-1) of the Nucleosome, PDB code: 8jh4:

Magnesium binding site 1 out of 1 in 8jh4

Go back to Magnesium Binding Sites List in 8jh4
Magnesium binding site 1 out of 1 in the Rna Polymerase II Elongation Complex Containing 60 Bp Upstream Dna Loop, Stalled at Shl(-1) of the Nucleosome


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna Polymerase II Elongation Complex Containing 60 Bp Upstream Dna Loop, Stalled at Shl(-1) of the Nucleosome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1803

b:21.6
occ:1.00
 O3' P:G10 2.0 20.2 1.0
OD1 A:ASP486 2.0 22.6 1.0
OD1 A:ASP482 2.1 16.9 1.0
OD1 A:ASP484 2.7 17.7 1.0
CG A:ASP486 2.8 22.6 1.0
OD2 A:ASP486 2.9 22.6 1.0
CG A:ASP482 3.1 16.9 1.0
C3' P:G10 3.4 20.2 1.0
OD2 A:ASP482 3.5 16.9 1.0
O2' P:G10 3.8 20.2 1.0
CG A:ASP484 3.8 17.7 1.0
C2' P:G10 4.0 20.2 1.0
OD2 A:ASP484 4.1 17.7 1.0
CB A:ASP486 4.2 22.6 1.0
C4' P:G10 4.3 20.2 1.0
N A:ASP482 4.4 16.9 1.0
CB A:ASP482 4.5 16.9 1.0
O A:ASP482 4.5 16.9 1.0
N A:ASP486 4.6 22.6 1.0
C A:ASP482 4.7 16.9 1.0
CA A:ASP482 4.8 16.9 1.0
CA A:ASP486 4.8 22.6 1.0
NH1 A:ARG447 4.9 20.2 1.0
N A:ASP484 4.9 17.7 1.0
C5' P:G10 4.9 20.2 1.0

Reference:

M.Akatsu, H.Ehara, T.Kujirai, R.Fujita, T.Ito, K.Osumi, M.Ogasawara, Y.Takizawa, S.I.Sekine, H.Kurumizaka. Cryo-Em Structures of Rna Polymerase II-Nucleosome Complexes Rewrapping Transcribed Dna J.Biol.Chem. 05477 2023.
ISSN: ESSN 1083-351X
DOI: 10.1016/J.JBC.2023.105477
Page generated: Fri Oct 4 13:10:25 2024

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