Magnesium in PDB 8jqu: Crystal Structure of Gppnhp Bound Gtpase Domain of RAB5A From Leishmania Donovani

The structure of Crystal Structure of Gppnhp Bound Gtpase Domain of RAB5A From Leishmania Donovani, PDB code: 8jqu was solved by D.Pandey, M.Zohib, R.K.Pal, B.K.Biswal, A.Arora, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.35 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	110.552, 42.266, 37.777, 90, 103.39, 90
R / Rfree (%)	16.2 / 20.3

The binding sites of Magnesium atom in the Crystal Structure of Gppnhp Bound Gtpase Domain of RAB5A From Leishmania Donovani (pdb code 8jqu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Gppnhp Bound Gtpase Domain of RAB5A From Leishmania Donovani, PDB code: 8jqu:

Magnesium binding site 1 out of 1 in the Crystal Structure of Gppnhp Bound Gtpase Domain of RAB5A From Leishmania Donovani


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Gppnhp Bound Gtpase Domain of RAB5A From Leishmania Donovani within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:16.8 occ:1.00 O2G A:GNP202 2.0 17.4 1.0 OG A:SER27 2.0 14.8 1.0 O2B A:GNP202 2.0 15.1 1.0 O A:HOH353 2.0 16.5 1.0 O A:HOH344 2.1 16.9 1.0 OG1 A:THR45 2.2 17.3 1.0 CB A:SER27 3.1 14.4 1.0 CB A:THR45 3.2 21.9 1.0 PG A:GNP202 3.2 19.7 1.0 PB A:GNP202 3.3 15.6 1.0 N3B A:GNP202 3.5 15.3 1.0 N A:THR45 3.7 23.9 1.0 O3G A:GNP202 3.9 17.6 1.0 N A:SER27 3.9 14.0 1.0 CA A:THR45 4.0 22.7 1.0 O2A A:GNP202 4.1 15.9 1.0 CA A:SER27 4.1 13.5 1.0 OD2 A:ASP68 4.1 18.2 1.0 O A:HOH333 4.2 25.2 1.0 CG2 A:THR45 4.2 21.8 1.0 OD1 A:ASP68 4.2 17.0 1.0 O3A A:GNP202 4.3 14.9 1.0 O1B A:GNP202 4.3 16.0 1.0 O1G A:GNP202 4.4 20.8 1.0 PA A:GNP202 4.5 17.0 1.0 O A:THR69 4.6 20.7 1.0 O A:GLU43 4.6 22.9 1.0 CG A:ASP68 4.6 17.7 1.0 C A:THR44 4.7 27.8 1.0 O1A A:GNP202 4.7 14.3 1.0 CB A:LYS26 5.0 15.1 1.0 CA A:THR44 5.0 28.4 1.0

D.Pandey, M.Zohib, R.K.Pal, B.K.Biswal, A.Arora. Crystal Structure of Gppnhp Bound Gtpase Domain of RAB5A From Leishmania Donovani To Be Published.