Magnesium in PDB 8k87: Dimer Structure of Procaryotic Ago

The binding sites of Magnesium atom in the Dimer Structure of Procaryotic Ago (pdb code 8k87). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Dimer Structure of Procaryotic Ago, PDB code: 8k87:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Dimer Structure of Procaryotic Ago


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Dimer Structure of Procaryotic Ago within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:90.7 occ:1.00 OP2 D:A1 1.9 92.0 1.0 OXT A:MET473 2.0 104.0 1.0 ND2 A:ASN434 2.0 82.8 1.0 OP1 D:A3 2.4 104.5 1.0 C A:MET473 2.6 107.1 1.0 CG A:ASN434 2.7 84.7 1.0 OD1 A:ASN434 2.9 88.8 1.0 O A:MET473 3.3 109.8 1.0 P D:A1 3.4 79.8 1.0 CA A:MET473 3.4 104.4 1.0 P D:A3 3.8 102.3 1.0 CB A:ASN434 3.9 79.6 1.0 OP1 D:A1 4.2 80.5 1.0 O5' D:A1 4.2 95.6 1.0 CB A:MET473 4.3 95.2 1.0 O A:PHE472 4.4 106.5 1.0 N A:MET473 4.5 101.9 1.0 OP2 D:A3 4.6 84.5 1.0 O5' D:A3 4.6 90.8 1.0 C5' D:A1 4.6 100.7 1.0 O3' D:U2 4.7 98.7 1.0 CG A:MET473 4.9 93.0 1.0 C A:PHE472 4.9 97.9 1.0 C5' D:A3 4.9 90.7 1.0 CA A:ASN434 5.0 73.9 1.0

Magnesium binding site 2 out of 2 in the Dimer Structure of Procaryotic Ago


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Dimer Structure of Procaryotic Ago within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg501 b:119.5 occ:1.00 O F:LEU178 2.2 99.3 1.0 CA F:PRO179 3.0 88.1 1.0 C F:LEU178 3.0 89.2 1.0 N F:PRO179 3.4 85.3 1.0 N F:ILE180 3.5 88.8 1.0 CD2 F:PHE471 3.6 98.8 1.0 C F:PRO179 3.6 89.9 1.0 O F:PHE471 3.9 103.1 1.0 CA F:PHE471 3.9 92.0 1.0 CB F:PHE471 3.9 93.7 1.0 CG1 F:VAL173 4.1 75.0 1.0 O F:VAL173 4.2 82.0 1.0 CG F:PHE471 4.2 97.0 1.0 CB F:PRO179 4.3 88.3 1.0 CG1 F:ILE180 4.3 79.5 1.0 CA F:LEU178 4.3 87.2 1.0 CG2 F:ILE180 4.3 92.4 1.0 C F:PHE471 4.4 97.1 1.0 N F:LEU178 4.4 90.7 1.0 C F:VAL173 4.5 69.0 1.0 CB F:VAL173 4.5 71.8 1.0 CE2 F:PHE471 4.6 97.9 1.0 CA F:ILE180 4.6 87.1 1.0 CB F:ILE180 4.6 85.5 1.0 CA F:ALA174 4.6 65.8 1.0 N F:ALA174 4.7 65.5 1.0 CD F:PRO179 4.7 86.7 1.0 O F:PRO179 4.7 91.2 1.0 CG F:PRO179 4.9 87.8 1.0 NZ F:LYS170 5.0 72.3 1.0 CB F:LEU178 5.0 86.4 1.0

X.Gao, S.Cui, D.Sun, Y.Wang. Structural Basis of Prokaryotic Argonaute System To Be Published.