Magnesium in PDB 8k88: Structure of Procaryotic Ago

The binding sites of Magnesium atom in the Structure of Procaryotic Ago (pdb code 8k88). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Procaryotic Ago, PDB code: 8k88:

Magnesium binding site 1 out of 1 in the Structure of Procaryotic Ago


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Procaryotic Ago within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:45.1 occ:1.00 OXT A:MET473 2.0 68.9 1.0 OP1 D:A3 2.0 52.4 1.0 OP2 D:A1 2.1 48.6 1.0 ND2 A:ASN434 2.3 49.0 1.0 C A:MET473 3.0 69.5 1.0 O A:MET473 3.3 68.9 1.0 P D:A3 3.3 40.5 1.0 P D:A1 3.5 50.3 1.0 CG A:ASN434 3.5 50.5 1.0 O3' D:U2 3.7 45.7 1.0 OE1 A:GLN181 4.1 58.6 1.0 O5' D:A3 4.2 46.2 1.0 OP1 D:A1 4.2 48.1 1.0 CB A:ASN434 4.3 45.5 1.0 CA A:MET473 4.3 63.8 1.0 OD1 A:ASN434 4.4 55.8 1.0 NZ A:LYS207 4.4 47.4 1.0 NE2 A:GLN181 4.4 56.9 1.0 OP2 D:A3 4.4 38.6 1.0 O5' D:A1 4.5 51.2 1.0 C5' D:A1 4.6 45.1 1.0 CE A:LYS207 4.6 41.2 1.0 CD A:GLN181 4.7 53.2 1.0 CB A:ALA203 4.8 46.4 1.0 CB A:MET473 4.8 58.0 1.0 CG A:MET473 4.8 59.7 1.0 CA A:ASN434 4.9 43.5 1.0

X.Gao, S.Cui, D.Sun, Y.Wang. Structural Basis of Prokaryotic Argonaute System To Be Published.