Magnesium in PDB 8k8s: F8-A22-E4 Complex of Mpxv in Complex with Dna and Ara-Ctp

The binding sites of Magnesium atom in the F8-A22-E4 Complex of Mpxv in Complex with Dna and Ara-Ctp (pdb code 8k8s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the F8-A22-E4 Complex of Mpxv in Complex with Dna and Ara-Ctp, PDB code: 8k8s:

Magnesium binding site 1 out of 1 in the F8-A22-E4 Complex of Mpxv in Complex with Dna and Ara-Ctp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F8-A22-E4 Complex of Mpxv in Complex with Dna and Ara-Ctp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:12.5 occ:1.00 O1B A:HF41102 1.8 6.6 1.0 OD2 A:ASP753 1.8 15.6 1.0 O A:TYR550 2.0 15.4 1.0 O1G A:HF41102 2.3 16.8 1.0 OD1 A:ASP549 2.4 26.7 1.0 O1A A:HF41102 2.9 15.5 1.0 CG A:ASP753 3.0 17.1 1.0 PB A:HF41102 3.2 15.4 1.0 C A:TYR550 3.2 12.5 1.0 CG A:ASP549 3.4 20.8 1.0 O A:ASN551 3.4 32.5 1.0 OD1 A:ASP753 3.5 20.1 1.0 PG A:HF41102 3.5 14.7 1.0 C A:ASN551 3.7 20.7 1.0 O3B A:HF41102 3.8 2.1 1.0 OD2 A:ASP549 3.8 19.0 1.0 PA A:HF41102 4.0 5.4 1.0 O3A A:HF41102 4.0 26.1 1.0 N A:SER552 4.1 13.0 1.0 CA A:TYR550 4.2 5.1 1.0 N A:ASN551 4.2 13.1 1.0 N A:TYR550 4.2 8.2 1.0 CB A:ASP753 4.2 12.6 1.0 CA A:ASN551 4.2 9.3 1.0 O2B A:HF41102 4.3 25.7 1.0 O3G A:HF41102 4.4 28.7 1.0 CA A:SER552 4.4 5.7 1.0 CB A:TYR550 4.5 8.8 1.0 N A:LEU553 4.5 20.5 1.0 O2G A:HF41102 4.6 20.0 1.0 CB A:ASP549 4.7 12.5 1.0 C A:ASP549 4.7 9.2 1.0 C5' A:HF41102 4.8 15.3 1.0 C A:SER552 5.0 16.2 1.0 O2A A:HF41102 5.0 6.7 1.0

Y.Shen, Y.Li, R.Yan. Structural Basis For the Inhibition Mechanism of the Dna Polymerase Holoenzyme From Mpox Virus. Structure 2024.
ISSN: ISSN 0969-2126
PubMed: 38579705
DOI: 10.1016/J.STR.2024.03.004