Magnesium in PDB 8kb8: Structure of the WDR91 WD40 Domain Complexed with RAB7

The structure of Structure of the WDR91 WD40 Domain Complexed with RAB7, PDB code: 8kb8 was solved by J.Li, X.L.Ma, S.Banerjee, Z.G.Dong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.49 / 2.49
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	55.452, 81.077, 116.404, 90, 94.41, 90
R / Rfree (%)	19.7 / 26.1

The binding sites of Magnesium atom in the Structure of the WDR91 WD40 Domain Complexed with RAB7 (pdb code 8kb8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the WDR91 WD40 Domain Complexed with RAB7, PDB code: 8kb8:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of the WDR91 WD40 Domain Complexed with RAB7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the WDR91 WD40 Domain Complexed with RAB7 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg201 b:77.1 occ:1.00 OG1 C:THR40 2.1 78.8 1.0 O1B C:GTP202 2.2 64.4 1.0 OG1 C:THR22 2.3 76.0 1.0 O1G C:GTP202 2.3 80.4 1.0 CB C:THR40 3.0 84.6 1.0 OD2 C:ASP63 3.1 77.3 1.0 OD1 C:ASP63 3.1 73.6 1.0 PG C:GTP202 3.3 81.2 1.0 PB C:GTP202 3.3 67.5 1.0 CG C:ASP63 3.4 74.7 1.0 CB C:THR22 3.7 68.0 1.0 O2G C:GTP202 3.7 71.2 1.0 O3B C:GTP202 3.8 77.8 1.0 N C:THR22 3.8 71.9 1.0 CG2 C:THR40 3.8 76.9 1.0 O C:THR64 3.9 77.9 1.0 O2B C:GTP202 3.9 71.8 1.0 CA C:THR22 4.2 69.2 1.0 NZ C:LYS21 4.2 67.9 1.0 CA C:THR40 4.3 88.6 1.0 N C:THR40 4.3 85.5 1.0 CB C:LYS21 4.4 68.0 1.0 CE C:LYS21 4.5 68.1 1.0 O3G C:GTP202 4.6 83.9 1.0 CG2 C:THR22 4.7 68.3 1.0 O3A C:GTP202 4.7 78.8 1.0 C C:LYS21 4.7 69.1 1.0 C C:THR64 4.7 75.1 1.0 O2A C:GTP202 4.8 68.5 1.0 CB C:ASP63 4.8 69.5 1.0

Magnesium binding site 2 out of 2 in the Structure of the WDR91 WD40 Domain Complexed with RAB7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the WDR91 WD40 Domain Complexed with RAB7 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg201 b:65.1 occ:1.00 OG1 D:THR22 1.9 67.5 1.0 OG1 D:THR40 2.0 65.4 1.0 O1G D:GTP202 2.0 60.4 1.0 O1B D:GTP202 2.1 66.8 1.0 O D:HOH302 2.3 57.5 1.0 O D:HOH301 2.5 57.2 1.0 CB D:THR22 3.0 69.5 1.0 CB D:THR40 3.0 64.3 1.0 PG D:GTP202 3.3 58.6 1.0 PB D:GTP202 3.4 65.9 1.0 O3B D:GTP202 3.7 66.5 1.0 O2A D:GTP202 3.8 65.7 1.0 OD2 D:ASP63 3.8 66.5 1.0 N D:THR40 3.8 64.5 1.0 N D:THR22 3.8 68.3 1.0 O2G D:GTP202 4.0 67.2 1.0 CA D:THR40 4.0 62.0 1.0 CG2 D:THR22 4.0 62.6 1.0 CA D:THR22 4.0 67.8 1.0 OD1 D:ASP63 4.1 64.3 1.0 CG2 D:THR40 4.1 57.6 1.0 O D:LYS38 4.3 63.4 1.0 CG D:ASP63 4.3 64.3 1.0 O2B D:GTP202 4.4 72.0 1.0 O3A D:GTP202 4.4 74.9 1.0 O3G D:GTP202 4.4 67.8 1.0 PA D:GTP202 4.4 65.1 1.0 O D:HOH304 4.5 66.0 1.0 O1A D:GTP202 4.6 70.9 1.0 O D:THR64 4.8 65.2 1.0 C D:ALA39 4.9 66.2 1.0 NZ D:LYS21 5.0 65.9 1.0

J.Li, X.L.Ma, S.Banerjee, Z.G.Dong. Structure of the WDR91 WD40 Domain Complexed with RAB7 To Be Published.