Magnesium in PDB 8ok9: Heterodimeric Complex of Archaeoglobus Fulgidus Argonaute Protein AF1318 (Afago) with Dna and Afago-N Protein Containing N-L1-L2 Domains

The structure of Heterodimeric Complex of Archaeoglobus Fulgidus Argonaute Protein AF1318 (Afago) with Dna and Afago-N Protein Containing N-L1-L2 Domains, PDB code: 8ok9 was solved by E.N.Manakova, M.Zaremba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	64.69 / 2.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	81.714, 105.893, 144.347, 90, 90, 90
R / Rfree (%)	19.8 / 22.7

The binding sites of Magnesium atom in the Heterodimeric Complex of Archaeoglobus Fulgidus Argonaute Protein AF1318 (Afago) with Dna and Afago-N Protein Containing N-L1-L2 Domains (pdb code 8ok9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Heterodimeric Complex of Archaeoglobus Fulgidus Argonaute Protein AF1318 (Afago) with Dna and Afago-N Protein Containing N-L1-L2 Domains, PDB code: 8ok9:

Magnesium binding site 1 out of 1 in the Heterodimeric Complex of Archaeoglobus Fulgidus Argonaute Protein AF1318 (Afago) with Dna and Afago-N Protein Containing N-L1-L2 Domains


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Heterodimeric Complex of Archaeoglobus Fulgidus Argonaute Protein AF1318 (Afago) with Dna and Afago-N Protein Containing N-L1-L2 Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:43.0 occ:1.00 O A:LEU427 2.2 42.0 1.0 OP1 R:DC3 2.2 44.5 1.0 OP3 R:DA1 2.2 54.0 1.0 OE1 A:GLN159 2.2 43.1 1.0 OXT A:LEU427 2.5 37.6 1.0 OP1 R:DA1 2.6 53.3 1.0 C A:LEU427 2.7 40.8 1.0 P R:DA1 2.9 53.0 1.0 CD A:GLN159 3.3 45.0 1.0 P R:DC3 3.5 41.1 1.0 NE2 A:GLN159 3.7 46.0 1.0 NZ A:LYS163 3.9 43.1 1.0 OP2 R:DA1 3.9 48.0 1.0 O3' R:DT2 4.0 45.2 1.0 OP2 R:DC3 4.1 46.7 1.0 NE A:ARG380 4.1 40.6 1.0 O5' R:DA1 4.1 58.5 1.0 O A:HOH609 4.2 44.4 1.0 CA A:LEU427 4.2 46.2 1.0 NH1 A:ARG380 4.3 37.8 1.0 C5' R:DA1 4.6 44.7 1.0 CG A:GLN159 4.6 42.4 1.0 OE1 A:GLN137 4.6 44.9 1.0 CE A:LYS163 4.6 46.6 1.0 CZ A:ARG380 4.7 42.3 1.0 O5' R:DC3 4.7 44.2 1.0 NE2 A:GLN137 4.7 46.1 1.0 CB A:LEU427 4.8 38.8 1.0 CG A:ARG380 4.9 42.4 1.0 O A:PHE426 4.9 35.7 1.0

E.Manakova, E.Golovinas, R.Poceviciute, G.Sasnauskas, A.Silanskas, D.Rutkauskas, M.Jankunec, E.Zagorskaite, E.Jurgelaitis, A.Grybauskas, C.Venclovas, M.Zaremba. The Missing Part: the Archaeoglobus Fulgidus Argonaute Forms A Functional Heterodimer with An N-L1-L2 Domain Protein. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 38197228
DOI: 10.1093/NAR/GKAD1241