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Magnesium in PDB 8osf: Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A

Enzymatic activity of Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A

All present enzymatic activity of Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A:
6.6.1.1;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A (pdb code 8osf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A, PDB code: 8osf:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 8osf

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Magnesium binding site 1 out of 5 in the Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:100.6
occ:1.00
O1G A:ATP401 2.1 103.6 1.0
PG A:ATP401 3.5 103.6 1.0
CB A:SER54 3.5 103.7 1.0
OG A:SER54 3.6 103.7 1.0
O3B A:ATP401 4.2 103.6 1.0
O2G A:ATP401 4.3 103.6 1.0
O3G A:ATP401 4.5 103.6 1.0
O2B A:ATP401 4.6 103.6 1.0
OH A:TYR151 4.8 117.9 1.0
O1A A:ATP401 4.8 103.6 1.0
NH1 F:ARG210 4.9 160.5 1.0

Magnesium binding site 2 out of 5 in 8osf

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Magnesium binding site 2 out of 5 in the Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:95.5
occ:1.00
O1G B:ATP401 2.1 92.0 1.0
O2B B:ATP401 2.1 92.0 1.0
O3B B:ATP401 2.2 92.0 1.0
PB B:ATP401 2.5 92.0 1.0
O1A B:ATP401 2.5 92.0 1.0
PG B:ATP401 2.6 92.0 1.0
O3A B:ATP401 2.9 92.0 1.0
PA B:ATP401 3.1 92.0 1.0
CB B:SER54 3.5 94.4 1.0
O2A B:ATP401 3.6 92.0 1.0
O3G B:ATP401 3.7 92.0 1.0
O2G B:ATP401 3.7 92.0 1.0
O1B B:ATP401 3.9 92.0 1.0
N B:SER54 4.1 94.4 1.0
NH2 A:ARG210 4.2 109.5 1.0
OG B:SER54 4.3 94.4 1.0
CA B:SER54 4.4 94.4 1.0
O5' B:ATP401 4.6 92.0 1.0
NZ B:LYS53 4.6 94.0 1.0
CB A:ALA171 4.9 121.2 1.0

Magnesium binding site 3 out of 5 in 8osf

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Magnesium binding site 3 out of 5 in the Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:63.8
occ:1.00
O1G C:ATP401 2.1 85.7 1.0
OG C:SER54 2.6 93.0 1.0
CB C:SER54 2.7 93.0 1.0
O2B C:ATP401 3.1 85.7 1.0
PG C:ATP401 3.5 85.7 1.0
OD2 C:ASP153 3.9 123.7 1.0
O3B C:ATP401 3.9 85.7 1.0
O1A C:ATP401 4.1 85.7 1.0
PB C:ATP401 4.1 85.7 1.0
CA C:SER54 4.2 93.0 1.0
O3G C:ATP401 4.3 85.7 1.0
NH2 B:ARG210 4.5 88.1 1.0
OD1 C:ASP153 4.6 123.7 1.0
O2G C:ATP401 4.6 85.7 1.0
CG C:ASP153 4.7 123.7 1.0
O3A C:ATP401 4.8 85.7 1.0
O C:LYS53 4.8 99.2 1.0
N C:SER54 4.9 93.0 1.0
C C:SER54 5.0 93.0 1.0

Magnesium binding site 4 out of 5 in 8osf

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Magnesium binding site 4 out of 5 in the Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:86.4
occ:1.00
O1G D:ATP401 2.0 104.9 1.0
CB D:SER54 3.1 101.2 1.0
O1A D:ATP401 3.2 104.9 1.0
OG D:SER54 3.3 101.2 1.0
PG D:ATP401 3.3 104.9 1.0
O3G D:ATP401 3.7 104.9 1.0
O3A D:ATP401 3.8 104.9 1.0
OD2 C:ASP168 4.0 166.9 1.0
PA D:ATP401 4.0 104.9 1.0
O3B D:ATP401 4.2 104.9 1.0
O2G D:ATP401 4.5 104.9 1.0
O2A D:ATP401 4.6 104.9 1.0
PB D:ATP401 4.6 104.9 1.0
CA D:SER54 4.6 101.2 1.0
O2B D:ATP401 4.7 104.9 1.0
OD2 D:ASP153 4.7 169.3 1.0
NH2 C:ARG210 4.9 118.7 1.0
CG C:ASP168 4.9 166.9 1.0

Magnesium binding site 5 out of 5 in 8osf

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Magnesium binding site 5 out of 5 in the Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Aaa+ Motor Subunit Chli of Magnesium Chelatase, Hexamer Conformation A within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:106.1
occ:1.00
O2B E:ATP401 2.1 106.0 1.0
O1G E:ATP401 2.1 106.0 1.0
PB E:ATP401 3.0 106.0 1.0
PG E:ATP401 3.1 106.0 1.0
O3B E:ATP401 3.1 106.0 1.0
OG E:SER54 3.6 105.3 1.0
O1B E:ATP401 3.7 106.0 1.0
NH1 D:ARG210 3.8 146.3 1.0
O3G E:ATP401 4.0 106.0 1.0
CB E:SER54 4.0 105.3 1.0
O2G E:ATP401 4.3 106.0 1.0
O3A E:ATP401 4.4 106.0 1.0
OH E:TYR151 4.8 127.7 1.0
N E:SER54 4.8 105.3 1.0
CZ D:ARG210 4.9 146.3 1.0

Reference:

D.Shvarev, A.I.Scholz, A.Moeller. Conformational Variability of Cyanobacterial Chli, the Aaa+ Motor of Magnesium Chelatase Involved in Chlorophyll Biosynthesis To Be Published.
Page generated: Fri Oct 4 15:01:45 2024

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