Magnesium in PDB 8oun: Arf Gtpase From the Asgard Gerdarchaea : GERDARFR1 Bound to Gdp

The structure of Arf Gtpase From the Asgard Gerdarchaea : GERDARFR1 Bound to Gdp, PDB code: 8oun was solved by J.Menetrey, C.Jackson, J.B.Dacks, M.Elias, R.Vargova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.73 / 1.65
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.29, 59.93, 72.35, 90, 102.09, 90
R / Rfree (%)	21.2 / 24

The binding sites of Magnesium atom in the Arf Gtpase From the Asgard Gerdarchaea : GERDARFR1 Bound to Gdp (pdb code 8oun). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Arf Gtpase From the Asgard Gerdarchaea : GERDARFR1 Bound to Gdp, PDB code: 8oun:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Arf Gtpase From the Asgard Gerdarchaea : GERDARFR1 Bound to Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Arf Gtpase From the Asgard Gerdarchaea : GERDARFR1 Bound to Gdp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg202 b:16.3 occ:1.00 OD1 A:ASP24 2.3 23.0 1.0 O1B A:GDP201 2.3 15.9 1.0 O A:HOH448 2.5 38.6 1.0 OD2 A:ASP65 2.5 28.8 1.0 O A:HOH309 2.5 24.6 1.0 OD1 A:ASP65 2.7 21.9 1.0 O A:HOH394 2.7 36.6 1.0 O A:HOH417 2.8 34.7 1.0 CG A:ASP65 2.9 24.4 1.0 CG A:ASP24 3.5 23.3 1.0 PB A:GDP201 3.6 16.5 1.0 O2B A:GDP201 3.8 16.8 1.0 O A:HOH440 3.9 36.6 1.0 CB A:ASP24 4.2 17.9 1.0 CA A:ASP24 4.2 15.7 1.0 N A:SER25 4.4 16.9 1.0 CB A:ASP65 4.4 19.6 1.0 OD2 A:ASP24 4.4 27.9 1.0 O3B A:GDP201 4.5 16.5 1.0 NZ A:LYS28 4.6 14.6 1.0 O3A A:GDP201 4.7 16.9 1.0 C A:ASP24 4.9 16.4 1.0 O1A A:GDP201 4.9 19.1 1.0

Magnesium binding site 2 out of 2 in the Arf Gtpase From the Asgard Gerdarchaea : GERDARFR1 Bound to Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Arf Gtpase From the Asgard Gerdarchaea : GERDARFR1 Bound to Gdp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:22.6 occ:1.00 O B:HOH302 2.0 24.8 1.0 OD1 B:ASP24 2.4 26.1 1.0 O3B B:GDP201 2.5 21.4 1.0 OD2 B:ASP65 2.6 29.1 1.0 O B:HOH318 2.7 31.1 1.0 OD1 B:ASP65 2.8 25.0 1.0 CG B:ASP65 3.1 25.4 1.0 CG B:ASP24 3.6 25.8 1.0 PB B:GDP201 3.8 21.1 1.0 O1B B:GDP201 3.9 21.5 1.0 O A:HOH312 4.1 48.1 1.0 O B:HOH405 4.1 49.3 1.0 CA B:ASP24 4.2 17.5 1.0 CB B:ASP24 4.3 19.4 1.0 N B:SER25 4.4 17.7 1.0 OD2 B:ASP24 4.5 30.6 1.0 NZ B:LYS28 4.6 17.2 1.0 CB B:ASP65 4.6 21.0 1.0 O2B B:GDP201 4.6 20.7 1.0 OE1 A:GLN69 4.8 37.5 1.0 C B:ASP24 4.9 17.8 1.0 O3A B:GDP201 4.9 21.9 1.0

J.Menetrey, J.Menetrey, C.Jackson, J.B.Dacks, M.Elias, R.Vargova. N/A N/A.