Magnesium in PDB 8ouy: Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 3.4 A Resolution

The binding sites of Magnesium atom in the Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 3.4 A Resolution (pdb code 8ouy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 3.4 A Resolution, PDB code: 8ouy:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 3.4 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:55.2 occ:1.00 O3B B:ADP401 2.6 76.9 1.0 OG1 B:THR132 2.7 61.5 1.0 HG1 B:THR132 3.2 54.5 1.0 O2B B:ADP401 3.4 69.7 1.0 PB B:ADP401 3.5 66.7 1.0 HB2 B:SER163 3.7 55.8 1.0 OG B:SER163 3.7 67.9 1.0 HB B:THR132 3.8 54.1 1.0 CB B:THR132 3.9 52.3 1.0 HG B:SER163 4.0 58.0 1.0 O1A B:ADP401 4.0 77.4 1.0 CB B:SER163 4.1 57.6 1.0 HB3 B:SER163 4.1 56.5 1.0 HG21 B:THR132 4.2 53.7 1.0 H B:THR132 4.3 54.4 1.0 OE1 B:GLU161 4.4 62.0 1.0 PA B:ADP401 4.6 80.7 1.0 O3A B:ADP401 4.6 70.0 1.0 CG2 B:THR132 4.6 49.9 1.0 O2A B:ADP401 4.6 72.0 1.0 O1B B:ADP401 4.7 64.8 1.0 CD B:GLU161 4.7 64.6 1.0 HB3 B:GLU161 4.7 56.0 1.0 OD1 B:ASP242 4.8 50.8 1.0 HE22 B:GLN285 4.8 51.0 1.0 OE2 B:GLU161 4.9 60.6 1.0 N B:THR132 5.0 57.7 1.0

Magnesium binding site 2 out of 3 in the Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 3.4 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:12.2 occ:1.00 OG1 C:THR114 2.0 31.0 1.0 O2B C:ATP401 2.0 40.1 1.0 HG1 C:THR114 2.1 33.4 1.0 O3G C:ATP401 2.9 35.1 1.0 CB C:THR114 3.2 35.2 1.0 HB C:THR114 3.4 34.1 1.0 HG21 C:THR114 3.4 34.0 1.0 PB C:ATP401 3.4 54.7 1.0 HD22 C:ASN138 3.6 40.1 1.0 CG2 C:THR114 3.8 33.6 1.0 HA3 C:GLY140 3.8 42.3 1.0 O3B C:ATP401 3.9 33.0 1.0 PG C:ATP401 4.1 39.5 1.0 HG22 C:THR114 4.1 33.8 1.0 H C:THR114 4.1 32.4 1.0 ND2 C:ASN138 4.1 41.5 1.0 O3A C:ATP401 4.2 43.0 1.0 OD1 C:ASP206 4.2 35.1 1.0 CA C:THR114 4.4 34.5 1.0 HA2 C:GLY140 4.4 43.0 1.0 O1B C:ATP401 4.4 46.7 1.0 OD2 C:ASP206 4.5 36.3 1.0 HD21 C:ASN138 4.5 39.8 1.0 O1A C:ATP401 4.5 44.0 1.0 N C:THR114 4.5 29.9 1.0 HA C:THR114 4.6 33.1 1.0 CA C:GLY140 4.6 42.6 1.0 HG23 C:THR114 4.6 33.5 1.0 CG C:ASP206 4.7 38.4 1.0 HB3 B:PRO330 4.8 29.7 1.0 CG C:ASN138 4.8 48.4 1.0 OD1 C:ASN138 4.8 52.2 1.0 PA C:ATP401 4.8 47.0 1.0 O1G C:ATP401 4.9 45.6 1.0 HB2 C:LYS113 4.9 25.9 1.0

Magnesium binding site 3 out of 3 in the Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 3.4 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:0.1 occ:1.00 O2B D:ATP302 1.8 41.1 1.0 O3G D:ATP302 2.0 43.8 1.0 PG D:ATP302 2.2 50.9 1.0 O1G D:ATP302 2.3 43.8 1.0 O3B D:ATP302 2.4 40.8 1.0 PB D:ATP302 2.6 43.8 1.0 HG1 D:THR55 3.1 45.8 1.0 OG1 D:THR55 3.5 43.4 1.0 O1B D:ATP302 3.7 46.1 1.0 O3A D:ATP302 3.7 36.9 1.0 O2G D:ATP302 3.8 50.1 1.0 HB D:THR55 3.9 48.0 1.0 H D:THR55 4.2 46.4 1.0 CB D:THR55 4.3 53.0 1.0 HB2 D:LYS54 4.5 44.6 1.0 ND1 D:HIS86 4.5 52.4 1.0 HZ2 D:LYS54 4.5 42.4 1.0 HZ3 D:LYS54 4.8 43.0 1.0 H D:GLY51 4.8 53.7 1.0 N D:THR55 4.9 37.3 1.0 HZ3 C:LYS297 4.9 30.9 1.0 PA D:ATP302 4.9 36.0 1.0 HD1 C:PHE270 5.0 25.1 1.0

L.A.Greenhough, C.C.Liang, O.Belan, S.Kunzelmann, S.Maslen, M.C.Rodrigo-Brenni, R.Anand, M.Skehel, S.J.Boulton, S.C.West. Structure and Function of the RAD51B-RAD51C-RAD51D-XRCC2 Tumour Suppressor Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06179-1