Magnesium in PDB 8ouz: Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 2.2 A Resolution

The binding sites of Magnesium atom in the Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 2.2 A Resolution (pdb code 8ouz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 2.2 A Resolution, PDB code: 8ouz:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 2.2 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 2.2 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:36.6 occ:1.00 HG1 B:THR132 1.5 43.8 1.0 OG1 B:THR132 1.9 46.4 1.0 O3B B:ADP401 2.7 55.4 1.0 O B:HOH519 2.9 35.2 1.0 HG B:SER163 2.9 48.6 1.0 HB B:THR132 3.0 43.9 1.0 CB B:THR132 3.0 42.9 1.0 O2B B:ADP401 3.1 52.0 1.0 O1A B:ADP401 3.1 59.0 1.0 PB B:ADP401 3.3 45.7 1.0 H B:THR132 3.6 43.2 1.0 HG22 B:THR132 3.6 42.8 1.0 HB2 B:SER163 3.6 48.3 1.0 OG B:SER163 3.7 51.2 1.0 PA B:ADP401 3.8 57.0 1.0 CG2 B:THR132 3.9 36.1 1.0 HB3 B:SER163 3.9 48.2 1.0 CB B:SER163 4.0 51.9 1.0 O2A B:ADP401 4.0 46.6 1.0 O3A B:ADP401 4.1 57.3 1.0 N B:THR132 4.1 39.5 1.0 CA B:THR132 4.1 40.3 1.0 HG21 B:THR132 4.3 42.6 1.0 OE1 B:GLU161 4.3 54.9 1.0 O B:HOH504 4.4 55.2 1.0 HA B:THR132 4.5 42.7 1.0 HB2 B:LYS131 4.6 42.7 1.0 HG23 B:THR132 4.7 42.7 1.0 O1B B:ADP401 4.7 52.1 1.0 OD2 B:ASP242 4.7 47.4 1.0 HE21 B:GLN285 4.7 49.1 1.0 HE22 B:GLN285 4.7 49.1 1.0

Magnesium binding site 2 out of 3 in the Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 2.2 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 2.2 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:36.5 occ:1.00 O3G C:ATP401 1.9 24.6 1.0 OG1 C:THR114 1.9 29.8 1.0 HG1 C:THR114 2.3 27.5 1.0 O C:HOH512 2.6 35.0 1.0 O2B C:ATP401 2.8 25.6 1.0 CB C:THR114 3.1 31.3 1.0 PG C:ATP401 3.2 30.2 1.0 HB C:THR114 3.2 29.5 1.0 O3B C:ATP401 3.4 20.0 1.0 H C:THR114 3.5 26.7 1.0 HD22 C:ASN138 3.7 36.4 1.0 PB C:ATP401 3.7 14.3 1.0 O2G C:ATP401 3.8 31.7 1.0 HG22 C:THR114 3.8 26.4 1.0 O C:HOH506 3.9 19.3 1.0 OD1 C:ASP206 3.9 33.5 1.0 N C:THR114 4.1 30.1 1.0 CG2 C:THR114 4.1 24.1 1.0 CA C:THR114 4.1 21.5 1.0 O C:HOH541 4.1 31.5 1.0 HA3 C:GLY140 4.2 32.8 1.0 O B:HOH536 4.2 25.7 1.0 OD2 C:ASP206 4.2 37.9 1.0 ND2 C:ASN138 4.2 40.0 1.0 O3A C:ATP401 4.3 25.5 1.0 HB2 C:LYS113 4.3 26.1 1.0 O1A C:ATP401 4.3 27.2 1.0 HA C:THR114 4.3 26.6 1.0 O1G C:ATP401 4.3 27.9 1.0 CG C:ASP206 4.5 36.7 1.0 HE2 C:LYS113 4.5 25.6 1.0 HG23 C:THR114 4.5 26.6 1.0 HD21 C:ASN138 4.5 35.7 1.0 PA C:ATP401 4.7 16.8 1.0 HG21 C:THR248 4.8 28.9 1.0 HG21 C:THR114 4.8 26.6 1.0 CG C:ASN138 4.8 37.4 1.0 HA2 C:GLY140 4.9 31.6 1.0 OD1 C:ASN138 4.9 43.1 1.0 O2A C:ATP401 4.9 32.6 1.0 HZ2 C:LYS113 4.9 26.9 1.0 HZ3 C:LYS113 4.9 28.0 1.0 O1B C:ATP401 5.0 35.7 1.0 CA C:GLY140 5.0 26.5 1.0

Magnesium binding site 3 out of 3 in the Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 2.2 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human RAD51B-RAD51C-RAD51D-XRCC2 (BCDX2) Complex, 2.2 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg302 b:52.6 occ:1.00 HG1 D:THR55 1.5 36.0 1.0 OG1 D:THR55 1.8 41.8 1.0 O2B D:ATP301 1.9 32.1 1.0 HB D:THR55 2.3 35.6 1.0 CB D:THR55 2.6 33.7 1.0 O2G D:ATP301 2.6 21.4 1.0 O D:HOH434 2.9 42.4 1.0 PB D:ATP301 3.1 18.9 1.0 H D:THR55 3.2 34.5 1.0 O3B D:ATP301 3.3 28.1 1.0 HG22 D:THR55 3.3 35.9 1.0 CG2 D:THR55 3.5 34.2 1.0 PG D:ATP301 3.6 36.3 1.0 CA D:THR55 3.7 30.8 1.0 N D:THR55 3.7 29.6 1.0 O2A D:ATP301 3.7 23.3 1.0 O3A D:ATP301 4.0 22.4 1.0 HG21 D:THR55 4.1 34.9 1.0 HA D:THR55 4.2 34.3 1.0 HG23 D:THR55 4.2 34.4 1.0 O1B D:ATP301 4.3 40.8 1.0 PA D:ATP301 4.3 38.4 1.0 O1G D:ATP301 4.4 35.7 1.0 HB2 D:LYS54 4.4 33.3 1.0 OD2 D:ASP149 4.5 50.9 1.0 O1A D:ATP301 4.5 42.6 1.0 HD2 D:HIS86 4.7 44.4 1.0 HB3 D:HIS86 4.7 44.2 1.0 O3G D:ATP301 4.7 32.2 1.0 OD1 D:ASP149 4.9 49.4 1.0 HE2 D:LYS54 4.9 31.6 1.0 C D:THR55 4.9 30.3 1.0 O D:HOH418 4.9 48.0 1.0 C D:LYS54 5.0 30.6 1.0

L.A.Greenhough, C.C.Liang, O.Belan, S.Kunzelmann, S.Maslen, M.C.Rodrigo-Brenni, R.Anand, M.Skehel, S.J.Boulton, S.C.West. Structure and Function of the RAD51B-RAD51C-RAD51D-XRCC2 Tumour Suppressor Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06179-1