Magnesium in PDB 8p1m: Structure of Hantaan Orthohantavirus (Htnv) Polymerase Bound to 5'Vrna and Ntp Mg

All present enzymatic activity of Structure of Hantaan Orthohantavirus (Htnv) Polymerase Bound to 5'Vrna and Ntp Mg:
2.7.7.48;

The binding sites of Magnesium atom in the Structure of Hantaan Orthohantavirus (Htnv) Polymerase Bound to 5'Vrna and Ntp Mg (pdb code 8p1m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Hantaan Orthohantavirus (Htnv) Polymerase Bound to 5'Vrna and Ntp Mg, PDB code: 8p1m:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Hantaan Orthohantavirus (Htnv) Polymerase Bound to 5'Vrna and Ntp Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Hantaan Orthohantavirus (Htnv) Polymerase Bound to 5'Vrna and Ntp Mg within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2202 b:24.4 occ:1.00 OD1 A:ASP972 2.0 20.8 1.0 O2A A:ATP2201 2.2 35.2 1.0 OD2 A:ASP1098 2.4 23.6 1.0 MG A:MG2203 2.6 23.0 1.0 CG A:ASP972 2.6 20.8 1.0 OD2 A:ASP972 2.7 20.8 1.0 O3G A:ATP2201 2.8 35.2 1.0 O3A A:ATP2201 2.8 35.2 1.0 PA A:ATP2201 3.1 35.2 1.0 O A:ALA973 3.1 21.5 1.0 H A:ALA973 3.3 21.5 1.0 CG A:ASP1098 3.3 23.6 1.0 O2B A:ATP2201 3.4 35.2 1.0 PB A:ATP2201 3.6 35.2 1.0 O5' A:ATP2201 3.7 35.2 1.0 N A:ALA973 3.8 21.5 1.0 HZ3 A:LYS1161 3.8 21.3 1.0 O3B A:ATP2201 3.8 35.2 1.0 PG A:ATP2201 3.9 35.2 1.0 OD1 A:ASP1098 3.9 23.6 1.0 CB A:ASP972 4.0 20.8 1.0 C A:ALA973 4.1 21.5 1.0 HE3 A:LYS1161 4.1 21.3 1.0 HA A:ASP972 4.1 20.8 1.0 HB2 A:ASP1098 4.2 23.6 1.0 O1A A:ATP2201 4.4 35.2 1.0 CB A:ASP1098 4.4 23.6 1.0 HB3 A:ASP972 4.4 20.8 1.0 CA A:ASP972 4.4 20.8 1.0 C A:ASP972 4.4 20.8 1.0 O2G A:ATP2201 4.5 35.2 1.0 HE2 A:LYS1161 4.5 21.3 1.0 CA A:ALA973 4.5 21.5 1.0 NZ A:LYS1161 4.6 21.3 1.0 OD1 A:ASP1099 4.6 24.0 1.0 CE A:LYS1161 4.6 21.3 1.0 HB2 A:ASP972 4.6 20.8 1.0 HB2 A:ALA973 4.7 21.5 1.0 HB3 A:ASP1098 4.8 23.6 1.0 HZ1 A:LYS1161 4.9 21.3 1.0 HB2 A:TRP976 4.9 24.8 1.0 HA A:THR974 4.9 22.9 1.0 C5' A:ATP2201 4.9 35.2 1.0 H5'1 A:ATP2201 5.0 35.2 1.0

Magnesium binding site 2 out of 2 in the Structure of Hantaan Orthohantavirus (Htnv) Polymerase Bound to 5'Vrna and Ntp Mg


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Hantaan Orthohantavirus (Htnv) Polymerase Bound to 5'Vrna and Ntp Mg within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2203 b:23.0 occ:1.00 O2A A:ATP2201 2.0 35.2 1.0 OD2 A:ASP972 2.2 20.8 1.0 MG A:MG2202 2.6 24.4 1.0 OD1 A:ASP1099 2.9 24.0 1.0 OE2 A:GLU1177 3.1 29.1 1.0 CG A:ASP972 3.1 20.8 1.0 OD2 A:ASP1098 3.4 23.6 1.0 OD1 A:ASP972 3.5 20.8 1.0 PA A:ATP2201 3.5 35.2 1.0 OD1 A:ASP1098 3.6 23.6 1.0 HZ3 A:LYS1161 3.7 21.3 1.0 CG A:ASP1099 3.8 24.0 1.0 CG A:ASP1098 3.8 23.6 1.0 CD A:GLU1177 3.9 29.1 1.0 OD2 A:ASP1099 3.9 24.0 1.0 HE3 A:LYS1161 4.2 21.3 1.0 HZ1 A:LYS1161 4.2 21.3 1.0 O3A A:ATP2201 4.2 35.2 1.0 O1A A:ATP2201 4.3 35.2 1.0 HG3 A:GLU1177 4.3 29.1 1.0 NZ A:LYS1161 4.3 21.3 1.0 O5' A:ATP2201 4.4 35.2 1.0 CB A:ASP972 4.4 20.8 1.0 HB2 A:ASP972 4.5 20.8 1.0 HA A:ASP972 4.6 20.8 1.0 OE1 A:GLU1177 4.6 29.1 1.0 CG A:GLU1177 4.7 29.1 1.0 HB2 A:GLU1177 4.7 29.1 1.0 O3G A:ATP2201 4.7 35.2 1.0 CE A:LYS1161 4.8 21.3 1.0 H A:ALA973 4.9 21.5 1.0 HA A:ASP1099 4.9 24.0 1.0 H A:ASP1099 5.0 24.0 1.0

J.R.Keown, L.Carrique, J.M.Grimes. Structure of Hantaan Orthohantavirus (Htnv) Polymerase Bound to 5'Vrna and Ntp Mg To Be Published.