Atomistry » Magnesium » PDB 8oun-8p39 » 8p2i
Atomistry »
  Magnesium »
    PDB 8oun-8p39 »
      8p2i »

Magnesium in PDB 8p2i: Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation with SPT4/5

Enzymatic activity of Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation with SPT4/5

All present enzymatic activity of Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation with SPT4/5:
2.7.7.6;

Other elements in 8p2i:

The structure of Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation with SPT4/5 also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation with SPT4/5 (pdb code 8p2i). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation with SPT4/5, PDB code: 8p2i:

Magnesium binding site 1 out of 1 in 8p2i

Go back to Magnesium Binding Sites List in 8p2i
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation with SPT4/5


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation with SPT4/5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:30.0
occ:1.00
OD1 A:ASP458 2.0 0.8 1.0
OD1 A:ASP462 2.1 0.8 1.0
OD1 A:ASP460 2.1 0.8 1.0
OD2 A:ASP462 2.2 0.8 1.0
CG A:ASP462 2.4 0.8 1.0
CG A:ASP460 3.1 0.8 1.0
CG A:ASP458 3.1 0.8 1.0
O A:ASP458 3.2 0.8 1.0
OD2 A:ASP460 3.3 0.8 1.0
OD2 A:ASP458 3.7 0.8 1.0
CB A:ASP462 3.9 0.8 1.0
N A:ASP458 4.1 0.8 1.0
C A:ASP458 4.1 0.8 1.0
CB A:ASP458 4.3 0.8 1.0
CA A:ASP458 4.3 0.8 1.0
CB A:ASP460 4.5 0.8 1.0
N A:ASP460 4.5 0.8 1.0
N A:ASP462 4.5 0.8 1.0
CA A:ASP462 4.6 0.8 1.0
NH2 A:ARG423 4.8 0.7 1.0
CA A:ASP460 4.8 0.8 1.0
C A:ASP460 4.8 0.8 1.0
O A:ASP460 5.0 0.8 1.0

Reference:

D.M.Tarau, F.Grunberger, M.Pilsl, R.Reichelt, F.B.Heiss, S.Koenig, H.Urlaub, W.Hausner, C.Engel, D.Grohmann. Structural Basis of Archaeal Rna Polymerase Transcription Elongation and SPT4/5 Recruitment Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
Page generated: Fri Oct 4 15:13:24 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy