Magnesium in PDB 8p39: Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State

The structure of Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State (pdb code 8p39). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State, PDB code: 8p39:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:34.4 occ:1.00 O3G B:DGT802 2.0 48.4 1.0 NE2 A:GLN290 2.7 37.3 1.0 O2A B:DGT802 3.2 40.3 1.0 O3A B:DGT802 3.4 45.1 1.0 PG B:DGT802 3.4 54.0 1.0 PA B:DGT802 3.9 41.0 1.0 CD A:GLN290 4.0 31.4 1.0 O3B B:DGT802 4.1 39.4 1.0 O2G B:DGT802 4.2 51.5 1.0 NH1 B:ARG196 4.3 32.7 1.0 PB B:DGT802 4.3 60.4 1.0 O1G B:DGT802 4.4 60.0 1.0 O2B B:DGT802 4.5 62.1 1.0 OE1 A:GLN290 4.6 31.2 1.0 O1A B:DGT802 4.7 40.0 1.0 CG A:GLN290 5.0 31.1 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Anaerobic Ribonucleotide Reductase From Prevotella Copri in Its Dimeric, Dgtp/Atp-Bound State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:20.0 occ:1.00 NE2 B:GLN290 2.0 30.1 1.0 O1G A:DGT801 2.9 26.4 1.0 O2G A:DGT801 3.1 30.9 1.0 CD B:GLN290 3.2 28.4 1.0 PG A:DGT801 3.5 34.4 1.0 O3A A:DGT801 3.8 24.3 1.0 OE1 B:GLN290 3.9 30.0 1.0 O2A A:DGT801 4.0 26.5 1.0 CG B:GLN290 4.3 21.7 1.0 O3B A:DGT801 4.4 31.9 1.0 O1B A:DGT801 4.5 25.4 1.0 NH2 A:ARG196 4.6 28.6 1.0 PA A:DGT801 4.6 25.9 1.0 PB A:DGT801 4.6 17.8 1.0 O3G A:DGT801 4.8 33.9 1.0

O.Bimai, I.Banerjee, I.Rozman Grinberg, P.Huang, D.Lundin, B.M.Sjoberg, D.T.Logan. Activity Modulation in Anaerobic Ribonucleotide Reductase: Nucleotide Binding to the Atp-Cone Mediates Long-Range Order-Disorder Transitions in the Active Site To Be Published.