Magnesium in PDB 8pne: E.Coli Yihx Wild Type Apo

All present enzymatic activity of E.Coli Yihx Wild Type Apo:
3.1.3.10;

The structure of E.Coli Yihx Wild Type Apo, PDB code: 8pne was solved by D.Zappala, P.Baumann, Y.Jin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.20 / 1.90
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	67.216, 79.567, 148.188, 90, 90, 90
R / Rfree (%)	20.4 / 23.4

The structure of E.Coli Yihx Wild Type Apo also contains other interesting chemical elements:

Chlorine	(Cl)	4 atoms
Calcium	(Ca)	1 atom

The binding sites of Magnesium atom in the E.Coli Yihx Wild Type Apo (pdb code 8pne). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the E.Coli Yihx Wild Type Apo, PDB code: 8pne:

Magnesium binding site 1 out of 1 in the E.Coli Yihx Wild Type Apo


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E.Coli Yihx Wild Type Apo within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg305 b:42.5 occ:1.00 OD2 A:ASP6 2.0 41.8 1.0 O A:HOH420 2.0 36.7 1.0 OD1 A:ASP166 2.0 44.8 1.0 O A:HOH451 2.0 34.7 1.0 O A:GLY8 2.0 47.5 1.0 O A:HOH452 2.0 39.6 1.0 CG A:ASP6 3.0 38.0 1.0 CG A:ASP166 3.0 46.5 1.0 C A:GLY8 3.2 52.6 1.0 OD2 A:ASP166 3.3 43.7 1.0 OD1 A:ASP6 3.4 42.7 1.0 O A:HOH530 3.9 45.9 1.0 OD1 A:ASP165 3.9 44.6 1.0 CA A:GLY8 4.0 45.2 1.0 N A:GLY8 4.3 40.8 1.0 N A:ASP166 4.3 51.6 1.0 CB A:ASP6 4.3 38.1 1.0 N A:ASN9 4.3 45.5 1.0 CB A:ASP166 4.3 47.8 1.0 O A:HOH535 4.3 47.0 1.0 CB A:ASN9 4.4 53.2 1.0 CG A:ASP165 4.5 42.9 1.0 O A:HOH514 4.5 37.3 1.0 O A:HOH520 4.5 66.7 1.0 CG2 A:VAL10 4.6 40.5 1.0 CA A:ASN9 4.7 44.6 1.0 OD2 A:ASP165 4.8 39.5 1.0 CA A:ASP166 4.8 47.9 1.0 C A:ASN9 4.8 41.5 1.0 N A:ASN167 4.9 44.1 1.0 CL A:CL307 4.9 51.6 1.0

D.Zappala, P.Baumann, Y.Jin. Apo Structure of E.Coli Yihx Wild Type To Be Published.