Magnesium in PDB 8pp3: Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Crystal Contact Tuned Negatively Supercharged Ferritin Variant Ftn(Neg)-M1 (Mg Formate Condition)

Enzymatic activity of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Crystal Contact Tuned Negatively Supercharged Ferritin Variant Ftn(Neg)-M1 (Mg Formate Condition)

All present enzymatic activity of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Crystal Contact Tuned Negatively Supercharged Ferritin Variant Ftn(Neg)-M1 (Mg Formate Condition):
1.16.3.1;

Protein crystallography data

The structure of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Crystal Contact Tuned Negatively Supercharged Ferritin Variant Ftn(Neg)-M1 (Mg Formate Condition), PDB code: 8pp3 was solved by L.Lang, T.Beck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 59.77 / 1.55
Space group P 4
Cell size a, b, c (Å), α, β, γ (°) 127.007, 127.007, 175.193, 90, 90, 90
R / Rfree (%) 21.9 / 24.1

Other elements in 8pp3:

The structure of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Crystal Contact Tuned Negatively Supercharged Ferritin Variant Ftn(Neg)-M1 (Mg Formate Condition) also contains other interesting chemical elements:

Iron (Fe) 12 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Crystal Contact Tuned Negatively Supercharged Ferritin Variant Ftn(Neg)-M1 (Mg Formate Condition) (pdb code 8pp3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Crystal Contact Tuned Negatively Supercharged Ferritin Variant Ftn(Neg)-M1 (Mg Formate Condition), PDB code: 8pp3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8pp3

Go back to Magnesium Binding Sites List in 8pp3
Magnesium binding site 1 out of 2 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Crystal Contact Tuned Negatively Supercharged Ferritin Variant Ftn(Neg)-M1 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Crystal Contact Tuned Negatively Supercharged Ferritin Variant Ftn(Neg)-M1 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg202

b:28.0
occ:1.00
 O H:HOH319 2.0 31.4 1.0
O L:HOH358 2.1 28.3 1.0
O L:HOH324 2.1 26.1 1.0
O L:HOH326 2.1 25.4 1.0
O H:HOH363 2.1 33.4 1.0
OE2 L:GLU134 3.8 31.1 1.0
OE2 H:GLU134 3.9 29.9 1.0
O L:HOH328 4.2 31.5 1.0
OE1 L:GLU134 4.2 31.6 1.0
O L:HOH362 4.2 30.6 1.0
OE1 H:GLU134 4.3 32.9 1.0
CD L:GLU134 4.4 30.9 1.0
HB3 L:CYS130 4.5 28.1 1.0
CD H:GLU134 4.6 32.1 1.0
HB3 H:CYS130 4.7 28.4 1.0
HE1 H:HIS118 4.8 23.1 1.0
HE1 L:HIS118 4.8 30.1 1.0
HE2 L:HIS118 4.9 29.7 0.0
HE2 H:HIS118 4.9 21.7 0.0

Magnesium binding site 2 out of 2 in 8pp3

Go back to Magnesium Binding Sites List in 8pp3
Magnesium binding site 2 out of 2 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Crystal Contact Tuned Negatively Supercharged Ferritin Variant Ftn(Neg)-M1 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Crystal Contact Tuned Negatively Supercharged Ferritin Variant Ftn(Neg)-M1 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg202

b:31.4
occ:1.00
 O K:HOH303 2.0 33.7 1.0
O J:HOH302 2.0 25.4 1.0
O J:HOH366 2.1 30.5 1.0
O K:HOH343 2.2 28.8 1.0
OE2 J:GLU134 3.7 31.4 1.0
OE2 K:GLU134 3.8 33.9 1.0
OE1 K:GLU134 4.1 34.8 1.0
OE1 J:GLU134 4.1 34.6 1.0
CD J:GLU134 4.4 31.6 1.0
CD K:GLU134 4.4 35.6 1.0
HB3 J:CYS130 4.4 28.7 1.0
HE2 J:HIS118 4.6 27.7 0.0
HB3 K:CYS130 4.6 30.1 1.0
HE2 K:HIS118 4.7 29.4 0.0
HE1 K:HIS118 4.9 31.3 1.0
HE1 J:HIS118 4.9 28.7 1.0

Reference:

L.Lang, H.Bohler, H.Wagler, T.Beck. Assembly Requirements For the Construction of Large-Scale Binary Protein Structures. Biomacromolecules 2023.
ISSN: ESSN 1526-4602
PubMed: 38059469
DOI: 10.1021/ACS.BIOMAC.3C00891
Page generated: Fri Oct 4 16:09:14 2024

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