Magnesium in PDB 8ptx: Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine

The structure of Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine (pdb code 8ptx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine, PDB code: 8ptx:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg101 b:98.8 occ:1.00 OP1 X:A37 2.9 165.7 1.0 P X:A37 4.0 176.5 1.0 OP2 X:A37 4.1 170.9 1.0 O6 X:G29 4.3 114.4 1.0 O6 X:G30 4.6 116.2 1.0 O4 X:U39 4.7 145.3 1.0 NZ C:LYS79 4.7 100.4 1.0 N7 X:G29 4.8 107.9 1.0 C5' X:A37 4.9 162.4 1.0 O5' X:A37 5.0 167.3 1.0

Magnesium binding site 2 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg102 b:140.6 occ:1.00 OP2 X:G12 3.0 182.8 1.0 OP1 X:U8 3.0 190.7 1.0 OP2 X:G9 3.5 165.8 1.0 P X:U8 4.1 195.7 1.0 OP2 X:U8 4.2 194.8 1.0 P X:G12 4.4 188.8 1.0 P X:G9 4.7 175.2 1.0 O5' X:U8 4.8 193.4 1.0 OP1 X:G9 4.9 164.2 1.0 OP2 X:U11 5.0 171.5 1.0 O5' X:U11 5.0 168.5 1.0

Magnesium binding site 3 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg103 b:174.9 occ:1.00 OP2 X:A14 3.0 202.2 1.0 C5' X:A14 4.2 200.8 1.0 O4 X:U8 4.3 189.6 1.0 P X:A14 4.5 207.2 1.0 C4 X:U8 4.9 190.7 1.0 O5' X:A14 4.9 203.4 1.0 MG X:MG104 5.0 197.1 1.0

Magnesium binding site 4 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg104 b:197.1 occ:1.00 N7 X:A15 3.4 218.1 1.0 N1 X:A58 3.4 230.3 1.0 C2 X:A58 3.6 230.9 1.0 C8 X:A15 3.8 219.9 1.0 OP2 X:A15 3.9 220.9 1.0 C5 X:A15 3.9 219.4 1.0 C6 X:A15 4.5 220.7 1.0 N6 X:A15 4.5 220.2 1.0 N9 X:A15 4.6 221.2 1.0 OP2 X:U16 4.6 267.4 1.0 C4 X:A15 4.6 220.4 1.0 C6 X:A58 4.7 231.0 1.0 N3 X:A58 4.8 230.2 1.0 MG X:MG103 5.0 174.9 1.0

N.Abbassi, M.Jaciuk, T.-Y.Lin, S.Glatt. Cryo-Em Structure of Human ELP123 in Complex with Trna, Acetyl-Coa, 5'-Deoxyadenosine and Methionine To Be Published.