Magnesium in PDB 8ptz: Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine

The structure of Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine (pdb code 8ptz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine, PDB code: 8ptz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg101 b:106.7 occ:1.00 OP1 X:A37 2.1 165.8 1.0 NZ C:LYS79 2.3 131.6 1.0 O2' X:G36 2.6 147.1 1.0 CE C:LYS79 3.1 133.5 1.0 P X:A37 3.4 174.6 1.0 O3' X:G36 3.7 154.7 1.0 C2' X:G36 3.9 149.0 1.0 OP2 X:A37 4.3 168.3 1.0 C3' X:G36 4.3 150.5 1.0 O5' X:A37 4.5 169.7 1.0 CD C:LYS79 4.6 129.7 1.0 C5' X:A37 4.8 167.9 1.0 OP2 X:G29 4.8 132.8 1.0 C4' X:G36 4.9 147.1 1.0 C1' X:G36 5.0 149.0 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ X:Mg102 b:157.7 occ:1.00 OP2 X:G12 2.0 216.8 1.0 P X:G12 3.0 217.8 1.0 O5' X:G12 3.4 219.5 1.0 OP1 X:G12 3.6 217.5 1.0 OP1 X:U8 4.0 200.9 1.0 OP2 X:U8 4.0 203.9 1.0 C5 X:U13 4.3 225.7 1.0 O3' X:U11 4.4 196.7 1.0 P X:U8 4.5 205.3 1.0 OP2 X:G9 4.5 175.4 1.0 C3' X:G12 4.6 221.9 1.0 C5' X:G12 4.6 219.1 1.0 C6 X:U13 4.8 226.4 1.0 C3' X:U11 4.9 197.3 1.0 C8 X:G12 4.9 218.8 1.0 O5' X:U8 5.0 204.8 1.0 O3' X:G12 5.0 223.5 1.0

N.Abbassi, M.Jaciuk, T.-Y.Lin, S.Glatt. Cryo-Em Structure of Human ELP123 in Complex with Trna, S-Ethyl-Coa, 5'-Deoxyadenosine and Methionine To Be Published.